FC878148

Overview
NameFC878148
Unique NameFC878148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length913
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878148_ssr50 microsatellite FC878148_ssr50:50..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10498 contig Ccv1_Contig10498:1..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 2.851e-82
Identity = 172/288 (59.72%), Postives = 197/288 (68.40%), Query Frame = 2
Query:  104 MASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDS-SAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASW-LLPIPKVA---------------------DLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSK---SYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSSAMTDITNLYG 889
            MASKLCDSCKSATA ++CR D+AFLC++CD+K+HAANKLASRHARVW+CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSV S  +VK      VNFLD D Y   +DG +G    EE EAASW LLP PK                       ++NTGQ    Y+F D DPYLDLDYG+VD K+E+ EQNSSGTDGVVPV+ R V      VN+ CF++DF G     +YG GYN               EVGVVPDG S + D++  YG
Sbjct:    1 MASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKH---TAVNFLD-DCYFSDIDG-NGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQ---QYLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRI--PTVNENCFEMDFTGGSKGFTYGGGYN----CISHSVSSSSMEVGVVPDGGS-VADVSYPYG 273          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.235e-57
Identity = 126/258 (48.84%), Postives = 153/258 (59.30%), Query Frame = 2
Query:  107 ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSSAMTDITN 880
            +S+LCDSCKS  AT+FCRAD+AFLC +CD KIH ANKLASRH RVW+CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPL+RRHERVP+TPFYD+V  +   +     VNF+DED          GDV+      ASWLL    +   N               + DLDY  ++      E+NSSG DGVVPVQ      N   +N+  F+ D   SK    G+N               +V +VP+      ++TN
Sbjct:    4 SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA---KSASSSVNFVDED---------GGDVT------ASWLLAKEGIEITNL--------------FSDLDYPKIEV---TSEENSSGNDGVVPVQ------NKLFLNEDYFNFDLSASKISQQGFN----FINQTVSTRTIDVPLVPESGGVTAEMTN 216          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.517e-48
Identity = 112/257 (43.58%), Postives = 144/257 (56.03%), Query Frame = 2
Query:  107 ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLP--IPKVADLNTG----QAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSKSYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSS 859
            A++ CD+CKS TA VFCR DSAFLC+ CDT+IH+     +RH RVWVCEVCEQAPA VTCKADAAALCV+CD DIHSANPLA RHERVPV  F+DS +++  K         L        VD  +  V  ++     WLLP    + A +  G    +    ++F D D  +D ++ +         QN++G D +VPVQT+         ND CFD+DF  SK   + Y                E GVVPDG++
Sbjct:   18 AARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSF----TRHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSS---TTVDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEFPNSFN----HHQNNAGGDSLVPVQTK-TEPLPLTNNDHCFDIDFCRSKLSAFTY--PSQSVSHSVSTSSIEYGVVPDGNT 260          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 97/206 (47.09%), Postives = 124/206 (60.19%), Query Frame = 2
Query:  110 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLP-IPKVADLNTGQAQEPYVFPDMDPYLDL-DYGHVDTKLEAQE----------QNSSGTDGVVPVQ 691
            ++ CD+C+SA  TV+CRADSA+LC +CD ++HAAN+LASRH RV VC+ CE+APA   CKADAA+LC TCD +IHSANPLARRH+RVP+ P  +   SS     +        E+R    V G+  +   +EAEAASWLLP   K +  N G       F   D +L+L DY   D +   Q           Q S G DGVVP+Q
Sbjct:    9 AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRL---VLGQE-EEDEDEAEAASWLLPNSGKNSGNNNG-------FSIGDEFLNLVDYSSSDKQFTDQSNQYQLDCNVPQRSYGEDGVVPLQ 203          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.629e-38
Identity = 104/264 (39.39%), Postives = 134/264 (50.76%), Query Frame = 2
Query:  110 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYLDHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPDMDPYLDL-DY-GHVDTKLEAQE----QNSSGTDGVVPVQTRNVNANGHL-VNDACFDLDFPGSKSYGYGY-NXXXXXXXXXXXXXXXEVGVVPDGSSAMTDIT 877
            ++ CD+C+SA  TV+C ADSA+LC  CD ++HAAN++ASRH RV VC+ CE APA   CKADAA+LC  CD +IHSANPLARRH+RVP+ P   +  SS                           D   ++ E ASWLLP P     N G     ++F     YLDL DY   +D + E  +    Q S G DGVVP+Q     +  HL  +   F L      S G  Y N               ++ VVP+  S  +DIT
Sbjct:   13 ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSET-------------------DADNDEDDREVASWLLPNP---GKNIGNQNNGFLFG--VEYLDLVDYSSSMDNQFEDNQYTHYQRSFGGDGVVPLQVE--ESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSASVSSMDISVVPE--STASDIT 248          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.765e-37
Identity = 97/263 (36.88%), Postives = 136/263 (51.71%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQGNGGVVNFLDEDRYL--DHVDGRSGDVSREEAEAASWLLPIPKVADLNTGQAQEPYVFPD-----MDPYLDLDYGHVDTKLEAQE-----QNSSGTDGVVPVQTRNVNANGHLV-NDACFDLDFPGSKSYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSSAMT 868
            CD+C+S   TV+C ADSA+LC++CD ++H+AN++ASRH RV VCE CE+APA   C+AD A+LC  CD ++HSANPLARRH+RVP+ P   +  SS     +       D ++ L  D  +G  GD  ++  E ASWL P    +D N        +F D     +D    +DY       + Q+     Q S G D VVP++     + GH   N   F  +     S G  YN               E GVVP+ ++ +T
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGD--KDAKEVASWLFP---NSDKNNNNQNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLKLE--ESRGHQCHNQQNFQFNIKYGSS-GTHYN-DNGSINHNAYISSMETGVVPESTACVT 273          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 379
            CD C+ A ATV C AD A LC  CD +IHAANKLAS+H R+ +         C++C++  A + C  D A LC  CD  IH AN  +  H+R   T
Sbjct:    5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLAT 100          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.081e-16
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVKQ 418
            CD C+ A AT+ C AD A LC  CD ++HAANKLAS+H R+++         C++C +  A + C  D A LC  CD   H+ N  +  H+R   T    ++ S++  Q
Sbjct:    5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQ 113          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 44/111 (39.64%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVW------------VCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVDSSAVK 415
            CD C    A+VFC AD A LC  CD ++H ANKLAS+H R              +C++C+   A + C+ D A LC  CD  IH+AN   ++H+R  +T    S  SS  K
Sbjct:    5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYK 115          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.550e-16
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWV---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 379
            C+ C++A ATV C AD A LC  CD KIHAANKLA +H RV +         C++C++A     C  D A LC  CD  IH+ NP    H+R  +T
Sbjct:    5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLT 100          
The following BLAST results are available for this feature:
BLAST of FC878148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
COL4_ARATH2.851e-8259.72Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL3_ARATH9.235e-5748.84Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL5_ARATH3.517e-4843.58Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL1_ARATH2.285e-3947.09Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH5.629e-3839.39Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH4.765e-3736.88Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
STO_ARATH3.211e-1744.79Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STH_ARATH2.081e-1637.61Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STHX_ARATH2.718e-1639.64Probable salt tolerance-like protein At1g75540 OS=... [more]
STHY_ARATH3.550e-1644.79Probable salt tolerance-like protein At1g78600 OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG01RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878148 ID=FC878148; Name=FC878148; organism=Citrus clementina; type=EST; length=913bp
CAGCATTTGTGTAATAAACGAAAAGGGCGAACTACACAGAGACCAAGTCA
GAGAGAGAGAGAGTGTTTTAAAATTTTTGAACTGACTCGTTGCGTTGAGA
GAAATGGCATCCAAGCTGTGTGACTCGTGCAAATCGGCAACGGCGACTGT
GTTCTGCCGGGCCGACTCGGCGTTCTTGTGTGTCAACTGCGACACCAAAA
TCCACGCGGCCAACAAGCTGGCGTCGCGCCACGCGCGTGTCTGGGTTTGC
GAGGTGTGTGAGCAGGCGCCGGCCCACGTCACGTGCAAGGCAGACGCTGC
GGCGCTCTGCGTCACGTGCGACCGCGACATCCATTCCGCCAACCCACTGG
CCCGGCGCCACGAGCGAGTCCCCGTGACACCCTTCTACGACTCAGTCGAC
TCCTCTGCCGTCAAGCAAGGCAACGGCGGAGTAGTCAACTTCTTAGACGA
AGACCGCTACTTGGACCACGTCGACGGGAGAAGCGGTGACGTCAGCAGGG
AGGAAGCAGAGGCGGCTTCGTGGCTGCTGCCGATCCCGAAGGTGGCGGAT
TTGAACACGGGTCAGGCGCAGGAGCCGTATGTGTTCCCGGATATGGATCC
GTATTTGGATTTAGATTACGGGCATGTGGATACGAAGCTAGAAGCCCAGG
AGCAAAACAGTTCGGGCACTGACGGTGTTGTTCCCGTACAAACCAGAAAC
GTTAACGCTAACGGCCATTTGGTCAACGATGCATGCTTTGACCTCGATTT
TCCAGGCTCCAAATCTTACGGTTATGGCTACAACTCTCACTCGCAGTGCC
TCAGTCAGAGTGTGTCGTCGTCATCGTTGGAGGTGGGAGTGGTGCCAGAT
GGAAGTAGTGCGATGACGGACATAACGAATCTGTACGGCAAAGGAGTGGG
GGTGGAAGGCAGG
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