FC878154

Overview
NameFC878154
Unique NameFC878154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12319 contig Ccv1_Contig12319:46..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878154 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.690e-79
Identity = 151/219 (68.95%), Postives = 176/219 (80.37%), Query Frame = 3
Query:    3 SMALKSFTGLRQSPQEQQHPHFIAQ-----ALP-RQQKFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 641
            ++ LKSFTGLRQS  EQ +  F++      +LP R+   RV+AA+ +PKL+NR LRV             ETLAQ G+ET LIERK+DNCKPCGGAIPLCMVGEF+LPLDIIDR+VTKMKMISPSN+AVDIG+TLK HEYIGMVRREVLDAYLRERAEK+GA+VINGLF+KMD P N++ PY L+YTEYDG  G  G K+T+EVDAVIGADGANSRVAK
Sbjct:    4 TVTLKSFTGLRQSSTEQTN--FVSHVPSSLSLPQRRTSLRVTAARATPKLSNRKLRVAVIGGGPAGGAAAETLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGANSRVAK 220          
BLAST of FC878154 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.125e-79
Identity = 151/216 (69.91%), Postives = 175/216 (81.02%), Query Frame = 3
Query:    3 SMALKSFTGLRQSPQEQQHPHFIAQALPRQQ---KFRVSAAKTSPKLTNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 641
            S+ALK+FTGLRQS  E  +   ++++LP  Q   + R++A+K+SP++  RNLRV             ETLA+ G+ETFLIERK+DNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLR+RA + GASV+NGLF+KMD+P+    PYVL+YT YD    G GEKRTLEVDAVIGADGANSRVAK
Sbjct:    3 SIALKTFTGLRQSSPEN-NSITLSKSLPFTQTHRRLRINASKSSPRVNGRNLRVAVVGGGPAGGAAAETLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAK 217          
BLAST of FC878154 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.585e-61
Identity = 122/187 (65.24%), Postives = 138/187 (73.80%), Query Frame = 3
Query:   87 RQQKFRVSAAKTSPKL-TNRNLRVXXXXXXXXXXXXXETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGV-GEKRTLEVDAVIGADGANSRVAK 641
            R  +    AA +SPKL + R LRV             E LA+ GVET LIERKLDNCKPCGGAIPLCMV EFDLPLD++DRKV KMKMISPSNVAVDIG TL PHEYIGMVRREVLDAYLR RAE  GA V+NGLF++ + P+     YV++Y  YD + G   GEKRT EVDA++GADGANSRVAK
Sbjct:   30 RMARLVTRAAASSPKLPSGRRLRVAVVGGGPAGGAAAEALAKGGVETVLIERKLDNCKPCGGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRVAK 216          
BLAST of FC878154 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.974e-50
Identity = 98/149 (65.77%), Postives = 114/149 (76.51%), Query Frame = 3
Query:  195 ETLAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 641
            E L + G+ET+L ERKLDN KPCGGAIPLCMV EFDLP +IIDR+V KMKMISPSN+ V+IGQTLK  EYIGM RREVLD +LRERAEK G  VING   K+D+P     PY L+Y ++    G  GE + L+VD VIGADGANSR+AK
Sbjct:   19 EILVKAGIETYLFERKLDNAKPCGGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIGQTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSDPYTLHYADH-SVGGTTGEMKILKVDVVIGADGANSRIAK 166          
BLAST of FC878154 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  201 LAQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHE--YIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRV 635
            +A+ G++  L++R     KPCGGAIP  ++ +FD+P  ++  K+T  +MISP+   VDI     P E  ++GMV RE  D +LRERA K GA  + G +++++  R+  +  V++  +        GE+   E   VIGADGANS+V
Sbjct:   21 MARAGLKVALLDRA-GRIKPCGGAIPPRLIRDFDIPDHLLVAKITSARMISPTGRFVDI-----PIENGFVGMVDREDYDEWLRERAGKAGAERLTGTWLRIE--RDSGKTVVVWRDKV------TGEEMKAETRVVIGADGANSQV 153          
The following BLAST results are available for this feature:
BLAST of FC878154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_ARATH4.690e-7968.95Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_TOBAC6.125e-7969.91Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ2.585e-6165.24Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY35.974e-5065.77Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA2.533e-1638.10Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA38CG02RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878154 ID=FC878154; Name=FC878154; organism=Citrus clementina; type=EST; length=642bp
CATCAATGGCTCTCAAATCCTTCACTGGCCTCCGCCAATCACCGCAAGAA
CAACAGCACCCCCACTTCATCGCTCAAGCCCTCCCACGTCAGCAAAAATT
CCGAGTCTCCGCGGCAAAAACCAGTCCAAAACTCACCAACCGCAACCTCC
GAGTGGCGGTCATCGGGGGCGGCCCAGCAGGCGGAGCTGCCGCCGAGACG
CTCGCACAAAATGGCGTCGAAACGTTCCTGATCGAGCGTAAGCTCGACAA
CTGCAAGCCCTGCGGCGGGGCCATCCCTCTCTGCATGGTGGGGGAGTTTG
ACCTGCCGCTGGACATAATCGACCGGAAGGTGACGAAGATGAAGATGATA
TCGCCGTCGAACGTGGCGGTGGACATCGGGCAGACGCTGAAGCCGCACGA
GTATATCGGGATGGTGAGGCGGGAGGTTCTGGACGCGTATTTGAGGGAGA
GGGCGGAGAAGAACGGGGCGAGCGTGATTAACGGGTTATTCATGAAGATG
GATTTGCCGAGGAACTTTGAGCAGCCGTACGTTTTGTATTATACGGAGTA
CGATGGGACAAAGGGCGGCGTCGGTGAGAAGAGGACGCTGGAGGTTGATG
CTGTTATCGGAGCTGATGGTGCTAACTCCAGAGTTGCCAAGT
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