FC878159

Overview
NameFC878159
Unique NameFC878159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878159_ssr167 microsatellite FC878159_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878159_ssr40 microsatellite FC878159_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10839 contig Ccv1_Contig10839:41..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.630e-59
Identity = 112/181 (61.88%), Postives = 138/181 (76.24%), Query Frame = 3
Query:  291 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLTTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            MS VNL +W  T  + NQA+  RS       PF  L +L +S A ++  RP+S +SA+ T EE         P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKRVRP LCLAAC+LVGG++SMAMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++GE
Sbjct:    1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGE 181          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.596e-50
Identity = 96/151 (63.58%), Postives = 120/151 (79.47%), Query Frame = 3
Query:  357 RSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            +S    P   +T  P+SL  +R     S S++ T E+N   + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES+AMPA C++EMIHTMSLIHDDLPCMDND LRRGKPTNH +YGE
Sbjct:   24 QSRSRSPPSLITLKPISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGE 174          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.822e-47
Identity = 103/184 (55.98%), Postives = 126/184 (68.48%), Query Frame = 3
Query:  291 MSCVNLAAWT--------QTCSIFNQASSRRSNKTQPFRTLTTLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            M+ V L +W            SI  ++ SR    T       T P+S  S+R       +  S+V T E+N   S   +FDF SY+I KA  VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES AMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++GE
Sbjct:    1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPIT------LTKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGE 178          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.929e-46
Identity = 99/186 (53.23%), Postives = 128/186 (68.82%), Query Frame = 3
Query:  282 LTKMSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLTTLPVS-------LASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            +  M+ V+L A  Q C +FNQ  S +S     F     +P+        L  +RP  P+++SA+ T +E+           F+FK Y+ +KA +VN+ALD A+ +K+P  IHE+MRYSLLAGGKRVRP+LCLAAC+LVGG++  AM AAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH IYGE
Sbjct:    1 MRSMNLVDLWA-QQACLVFNQTLSYKS-----FNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGE 180          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.446e-45
Identity = 98/169 (57.99%), Postives = 125/169 (73.96%), Query Frame = 3
Query:  357 RSNKTQPFRTLTTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            RSN   P +    LP+S   S   R+P+      SISA+    QT EE+ + S          +FDFK+YMI KA++VN+AL+ AV +++P+KIHESMRYSLLAGGKRVRP+LC+AAC+L GG ES+AMP+AC++EMIHTMSL+HDDLPCMDND LRRGKPTNH ++GE
Sbjct:    2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGE 168          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.143e-41
Identity = 80/153 (52.29%), Postives = 112/153 (73.20%), Query Frame = 3
Query:  345 ASSRRSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            A++RR  +       + +  ++ +++  R    S+++ + E      +FDFK YMI KA T+N+ALD A+ L +P+ IH++MRY++LAGGKRVRP+LCLAAC+LVGG E +A+ AAC++EMIHTMSLI DDLPCMDND LRRGKPT H ++GE
Sbjct:   31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGE 183          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.389e-40
Identity = 86/162 (53.09%), Postives = 111/162 (68.52%), Query Frame = 3
Query:  330 SIFNQASSRRSNKTQPFRTLTTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            S+F Q+  RR N     ++L       P S  + +  R +     +  + N A    FDFK YMI+KA +VN ALD +V L++P+ + E++RYSLLAGGKRVRP+LC+A C+LVGG E+ AM AAC++EMIHT SLIHDDLPCMDN  LRRGKPTNH +YGE
Sbjct:   11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGE 168          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.094e-40
Identity = 73/106 (68.87%), Postives = 92/106 (86.79%), Query Frame = 3
Query:  486 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            TF+F  YM+ KA +VN+AL+ A+ + +P+KIHE+MRY++LA GKRVRP+LCLA+C+LVGG E+ AMPAAC++EMIHTMSLI DDLPCMDND LRRGKPT H +YGE
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGE 187          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.314e-34
Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  420 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            RPR  + +SA++ +  +        S   +F SYM  KA ++N+ALD +       V L +PV ++H++MRY+LL GGKRVRP+LCL AC+LVGG ES AMPAAC++EMIH  SLI DDLPCMD+D LRRGKPTNH ++GE
Sbjct:    2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGE 142          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.249e-33
Identity = 67/144 (46.53%), Postives = 96/144 (66.67%), Query Frame = 3
Query:  390 TTLPVSLASQRPRRP------VSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLA-GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 800
            + +P+S     P +P      +S +A+++   +   S  FD ++Y     + +NQ LD A+ +K P  I+E+MRYS+LA G KR  PV+C+AAC+L GG    A P AC++EM+H  SLIHDDLPCMD+DP+RRGKP+NHT+YG
Sbjct:    6 SAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYG 149          
The following BLAST results are available for this feature:
BLAST of FC878159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GGPPS_HEVBR6.630e-5961.88Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL9.596e-5063.58Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH5.822e-4755.98Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CAPAN4.929e-4653.23Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO2.446e-4557.99Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH2.143e-4152.29Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH1.389e-4053.09Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP2_ARATH3.094e-4068.87Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH3.314e-3453.90Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
GGR_ARATH6.249e-3346.53Geranylgeranyl pyrophosphate synthase-related prot... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878159 ID=FC878159; Name=FC878159; organism=Citrus clementina; type=EST; length=847bp
CCAAAATCCAAAGTTTTATCTTTGCCCGCTGTTGGTTGGCCTCCCTCCCT
CCACCGTGCATTTGCGGTTGCCGCTAAATTTCCATCTTTGGTCTAAAGAA
AAAAAAAAGGAAAATGGCTTTGTTTGGTAACATGGTACAATTTGGGCATT
TCTGTTTATGAGTCTCGAAGAAGAAGAAGGAATCGGGAGGATAAAGTGGG
AGAGGCTTACGGCTTGCCTGCCCAGATTGCGTATTCTCGGTTGTCAGTTC
TCGCACCAGTGTAATCTCCATTTCTTCTTGCCTTACCAAAATGAGTTGCG
TCAATCTTGCGGCATGGACTCAAACATGCTCAATCTTTAACCAAGCTAGC
AGTCGCAGATCTAACAAAACTCAGCCGTTCCGTACGCTTACAACACTGCC
CGTTTCCTTGGCTTCACAGAGACCAAGGCGCCCCGTTTCGATCTCCGCAG
TTCAAACTCTCGAGGAAAACCCCGCCCCAAGCCCCACTTTCGATTTCAAG
TCCTACATGATCCAAAAAGCAAGTACCGTCAACCAAGCCTTAGACGCCGC
CGTTTCGCTCAAGGACCCCGTGAAGATCCACGAATCCATGCGATACTCTT
TACTGGCGGGCGGCAAGCGGGTGCGCCCTGTGCTCTGCCTCGCCGCTTGT
GACCTCGTTGGTGGCCACGAGTCCATGGCCATGCCAGCTGCATGCTCTAT
CGAGATGATCCACACCATGTCCTTAATTCACGACGATTTGCCTTGCATGG
ATAACGACCCTCTACGTCGAGGGAAGCCCACGAACCACACGATCTACGGC
GAAGACGTCGCCGTTTTGGCCGGCGATGCGCTTTTGGCCTATGCTTT
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