FC878169

Overview
NameFC878169
Unique NameFC878169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6655 contig Ccv1_Contig6655:361..1284. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878169 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 7.116e-57
Identity = 104/122 (85.25%), Postives = 116/122 (95.08%), Query Frame = 2
Query:  557 MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGGAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNL 922
            MAC+KLGSK+DAFQRQGQAWFCT+GLPSDIVVEVGEMSFHLHKFPLLSRSG MER IAEAS++ ++KC+I + D+PGG KTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEE+G+GNL
Sbjct:    1 MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNL 122          
BLAST of FC878169 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.596e-32
Identity = 65/116 (56.03%), Postives = 91/116 (78.45%), Query Frame = 2
Query:  575 GSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGGAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNL 922
            G KTD F+ +GQ+WF  + +PSD++V++G+M+FHLHK+PLLSRSG M RLI E+ +   +  I+ L D+PGG + FEL +KFCYGV ++LTA+N+  LRCAAE+LEMTE+  +GNL
Sbjct:   32 GVKTDGFELRGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRD--PDPTILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNL 145          
BLAST of FC878169 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.184e-27
Identity = 57/121 (47.11%), Postives = 88/121 (72.73%), Query Frame = 2
Query:  581 KTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKC-------IINLLDIPGGAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNL 922
            K D F R+ ++W+  S +PSD++V+VG+++F+LHK+P++SRSG M R + E+S   E +        ++ + D+PGGA +FEL A+F YG+ ++LTA+N+  LRCAAE+LEMTEE  +GNL
Sbjct:   32 KNDGFVRRDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNL 152          
BLAST of FC878169 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.090e-24
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 2
Query:  545 HRQKMACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGGAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNL 922
            H QK++  K         RQ  + +    +PSDI +EV   +F LHKFPL+SRSG + R++AE  +    K  + LL++PGGA+TFEL AKFCYG+  E+T+SNV  L C +++LEMTEEY   NL
Sbjct:   19 HHQKLSLAKSS-------RQSCSEWIFRDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISK--VELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNL 135          
BLAST of FC878169 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 2
Query:  566 VKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAMERLIAEASEKAEEKCIINLLDIPGGAKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEYGDGNL 922
            + + S + +  R GQ W  +  +P+D+VVEVGE +F LHKF L+++S  + +LI E+ +    +  INL DIPGG + FE  AKFCYGV  E+T  NV  L CAAE L+MT++Y D NL
Sbjct:    9 INMNSMSSSLARTGQ-WVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTR--INLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNL 124          
The following BLAST results are available for this feature:
BLAST of FC878169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1044_ARATH7.116e-5785.25BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT3_ARATH1.596e-3256.03Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.184e-2747.11Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y5880_ARATH2.090e-2446.83BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH4.655e-2447.06Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA83DG05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878169 ID=FC878169; Name=FC878169; organism=Citrus clementina; type=EST; length=924bp
CAAAGGTTTTGTTTATGGAATCTTCTCCGTGAGGCTTGAGGCCGAGATGA
AAGGGTTTTGATTTTATGAAAGGAAAAGTGGAGGGGTTGACCAAATTAGG
AAGTTTGGTGGTTTTAGGCTGAGAATTTAGTGCTTCTTCTGAAGTTGTTT
TATGGTTAATTTTACATGGGATCAGAACTGGGTTTCTGAAAAGATTAACC
TATTGATTGACTTTGGGGAAGTTTTTTTCTGAGAGTAGAGCGGCCTTGTG
CTGTTTTCTGGGCTTGTTTTTTACATAAATGTCATAGAAGAAGCTACATT
TTGGTGCTCTTGCTACAATTTAGAAGATGAAGTCTGAGGAATTTTGGGTT
GTTTTCTCAACGTTTTTGTGGGTAAATTTGGTTTGAGAGTGGCGTGCACT
GTGCAGGAGCAAAACTCAACTCGGATTGTGTGTTTGTTTGTGGAAGTGCT
TTGGTTTGGGGTATTTTAGGTTGTATTGTTCTTAAGTTAGGTGTTTAGCT
TAGCTCTTTACTTGAAGCTCTATTTTTTATTTGATCCCAGCCTGCATCGT
CAGAAAATGGCTTGCGTGAAACTGGGATCCAAAACTGATGCGTTTCAACG
GCAAGGACAGGCATGGTTCTGCACATCTGGTCTTCCTAGTGATATAGTTG
TTGAAGTTGGAGAGATGTCCTTCCACCTCCACAAGTTCCCATTACTCTCT
AGAAGTGGGGCTATGGAAAGATTGATTGCAGAAGCATCTGAAAAGGCAGA
AGAAAAATGTATCATAAACCTCCTTGACATTCCTGGCGGGGCCAAGACAT
TTGAACTAGTGGCCAAGTTCTGCTATGGTGTGAAACTTGAACTAACTGCC
TCAAATGTTGTGTACCTACGATGTGCTGCTGAGCATCTTGAAATGACAGA
GGAATATGGCGATGGCAATCTTAT
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