FC878293

Overview
NameFC878293
Unique NameFC878293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878293_ssr763 microsatellite FC878293_ssr763:763..774. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7505 contig Ccv1_Contig7505:21..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878293 vs. ExPASy Swiss-Prot
Match: MLOH1_ORYSJ (MLO protein homolog 1 OS=Oryza sativa subsp. japonica GN=MLO1 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.594e-11
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 2 
Query:  758 LPIN*LSSFINSQWINLQILLLVGTKLELVIIEMAQEIQDRTTVVRGAPVVEQNNKYF 931
            L I+ L + I   ++ L I+LLVGTKLE+VI++MAQEIQDR TV++GAPVVE +NKYF
Sbjct:  284 LDIHGLGTLIWISFVPLIIVLLVGTKLEMVIMQMAQEIQDRATVIQGAPVVEPSNKYF 341
[Close]
BLAST of FC878293 vs. ExPASy Swiss-Prot
Match: MLOH1_ORYSI (MLO protein homolog 1 OS=Oryza sativa subsp. indica GN=MLO1 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.594e-11
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 2 
Query:  758 LPIN*LSSFINSQWINLQILLLVGTKLELVIIEMAQEIQDRTTVVRGAPVVEQNNKYF 931
            L I+ L + I   ++ L I+LLVGTKLE+VI+EMAQEIQDR TV++GAP+VE +NKYF
Sbjct:  284 LDIHGLGTLIWISFVPLIIVLLVGTKLEMVIMEMAQEIQDRATVIQGAPMVEPSNKYF 341
The following BLAST results are available for this feature:
BLAST of FC878293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MLOH1_ORYSJ1.594e-1162.07MLO protein homolog 1 OS=Oryza sativa subsp. japon... [more]
MLOH1_ORYSI1.594e-1162.07MLO protein homolog 1 OS=Oryza sativa subsp. indic... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA24CD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878293 ID=FC878293; Name=FC878293; organism=Citrus clementina; type=EST; length=938bp
AGCGCCGCTACTCTCGATCCAGTGCTCCAACACCGGCTCAGATCTCTTGC
TTTTATATCACCGCGTCAAGCCTCTCCGTCACGCCGTCAAGCCTCCATCA
AGTGTTACTGCTTCAAGCCTTCATCAAGTGTCACTGCGTCAAGCCTCTCT
GCAACGCCGTCAAGCTTCCATCATGCGTCACCGCGTCAAGCCTCTCTCCG
CTGTCATAAGTCACTGACGCAGCACCGTGCCATCACTAGCCAACCAGCCA
CCAAAATTGACAGCCGTGCTAGCTACCCACCACCACAATACTCTGCCACT
GTATGCTAATACTCCACAAAATCTTCTCAAGACTTCGAGCCACAATGTCC
AGGTCTGCTTTTTCAAGTCTTGCTTCTTTAAGTTTTTAGTATCATCAAGT
CTTGCTTCTTCAAGTCTTAAAAGGTTAAAACAACAATTTTAGATTTCAAA
TCTTGCTTCTTCAAGTCTTAAAAGGTTAAAACAACAATTTTAGATTTCAA
ATCTTGCTTCTTCAAGTCTTAAAGTGTATCTTCAGCCACCAATTATATTT
GTGGGTATTCACTGGTTCGTTGAGTAATTTTTTCAAACAGATGGGGTATC
ACGTCATAACAGCCTTGTATATATCTATACATAACTAATGGTATCTCAAG
GAAATTAATTAACCATTAACAATATGAATCTGCCGCTGCAGAATGGGACT
CACTTAGCTGGTTAACAGTAGCTCCACTCGTTGTAAGTCACTCATCTATT
AAACTGTCTCCCAATTAATTAATTAAGTTCGTTTATTAACAGTCAGTGGA
TAAATTTGCAGATCCTTCTCTTGGTGGGTACAAAGCTAGAACTAGTCATA
ATAGAAATGGCACAAGAAATTCAAGATCGAACAACGGTTGTAAGAGGGGC
TCCAGTTGTTGAGCAAAACAACAAATATTTTGGTTCAA
back to top