FC878303

Overview
NameFC878303
Unique NameFC878303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length810
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878303 vs. ExPASy Swiss-Prot
Match: GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.455e-23
Identity = 73/187 (39.04%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:   58 EAALKTSLRKEMALKLSPQAVDEICAVNLP-NGVACXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXHTLTVCSKQDQDLDERLN-------FDDLGPIPTSELAVPTDDVANLEWLSHFVEDSFAEYSSPFPAGTLPVKAKENGAEPEHKPALAI---HCFKTPIPAKARSKRSRTGLRIW 585
            +AALK+S+RKEMALK +    +E  AV    NG +                  A                    + V S++  D  + L         DD G +PTSEL++P DD+ANLEWLSHFVEDSF EYS P   GT   K      + +H P  A+    CFK+P+PAKARSKR+R GL++W
Sbjct:    3 QAALKSSVRKEMALKTTSPVYEEFLAVTTAQNGFSVDDFSVDDLLDLSNDDVFADEETDLKAQH--------EMVRVSSEEPNDDGDALRRSSDFSGCDDFGSLPTSELSLPADDLANLEWLSHFVEDSFTEYSGPNLTGTPTEKPAWLTGDRKH-PVTAVTEETCFKSPVPAKARSKRNRNGLKVW 180
The following BLAST results are available for this feature:
BLAST of FC878303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GAT14_ARATH1.455e-2339.04GATA transcription factor 14 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878303 ID=FC878303; Name=FC878303; organism=Citrus clementina; type=EST; length=810bp
CTATCTTCTCCTCCTCCTCCTCCTCCTCCCACTGATTTTCAGGATATGGA
ATGCGTTGAAGCCGCTTTGAAGACCAGTTTGAGGAAGGAAATGGCTCTGA
AATTAAGCCCACAGGCGGTTGATGAAATTTGTGCCGTTAATTTACCAAAC
GGCGTCGCTTGCGACGACTTCTTCGTTGACGACCTTCTTGACTTCTCTAA
CGATGACGTTGTCGCTGAACAACAGCAACTGCAAGAGCCCCAACAAGAGA
AAGGAGAAGAACAGAAGAAACACACCCTCACTGTCTGTTCAAAACAAGAC
CAAGACTTGGACGAGAGACTCAATTTTGACGACTTGGGTCCCATACCCAC
CAGCGAACTCGCCGTCCCGACGGATGATGTTGCGAACCTTGAATGGTTGT
CTCATTTTGTTGAGGATTCTTTCGCGGAATACTCTTCACCGTTTCCCGCC
GGAACTTTGCCGGTGAAAGCAAAAGAAAACGGGGCTGAACCGGAACATAA
ACCGGCTTTAGCAATTCATTGTTTCAAGACTCCGATTCCAGCCAAGGCCA
GGAGCAAACGCTCGAGAACCGGCCTTCGAATTTGGTCTCTTGGGTCCCCT
TCTTTATCGGACTCATCCTCAACTTCAAGTGCCTCATCTTCGTCATCTCC
TTCGAGCCCTTGGCCAGTTTCCACTAACCCCGGTTCATTGGCCAGCCTTA
GACCCGCCGAACCGTTCATTGTAAAACCTCCGAAGAAAAATTGAAGAAAA
AATCGCCGCCGGAAGGGTATAACGCTGGAGGTAATATCAGTTGGGGTCAG
TTTACTCGCC
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