FC878331

Overview
NameFC878331
Unique NameFC878331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878331_ssr50 microsatellite FC878331_ssr50:50..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10204 contig Ccv1_Contig10204:32..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878331 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.824e-31
Identity = 80/194 (41.24%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  233 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 814
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G                                         +++SAE+LDA LD Y
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMT----RNRGVLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEELDAQLDAY 247          
BLAST of FC878331 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.022e-30
Identity = 80/194 (41.24%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  233 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 814
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G                                         +++SAE+LDA LD Y
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMT----RNRGSGGFGGGGGTRRGTRGGSRGRGRGTGRSSKQQLSAEELDAQLDAY 250          
BLAST of FC878331 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.335e-30
Identity = 79/194 (40.72%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  233 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 814
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA ++N G                                         +++SAE+LDA LD Y
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRGGMT-----RNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNSKQQLSAEELDAQLDAY 248          
BLAST of FC878331 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.743e-30
Identity = 87/236 (36.86%), Postives = 117/236 (49.58%), Query Frame = 2
Query:  107 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 814
            M+  +DMSLDDIIK N+                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y  V LDG+PM I++V + I  +   PA +   GN  G+                                    +++SAE+LDA LD Y
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQS---GNRGGM---------TRSRGSGGFGGRGSQGRGRGTGRNSKQQQLSAEELDAQLDAY 211          
BLAST of FC878331 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 79/194 (40.72%), Postives = 107/194 (55.15%), Query Frame = 2
Query:  233 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 814
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   PA +VN G                                         +++SAE+LDA LD Y
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRGGMT----RNRGAGGFGGGGGTRRGTRGGARGRGRGAGRNSKQQLSAEELDAQLDAY 250          
BLAST of FC878331 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.323e-29
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  233 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 604
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 188          
BLAST of FC878331 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.131e-28
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  233 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 604
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of FC878331 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.381e-27
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  233 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 604
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI 184          
The following BLAST results are available for this feature:
BLAST of FC878331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
THOC4_TAEGU7.824e-3141.24THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_BOVIN1.022e-3041.24THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_MOUSE1.335e-3040.72THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
REFP2_MOUSE1.743e-3036.86RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_HUMAN3.883e-3040.72THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_XENTR7.323e-2952.42THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4A_XENLA2.131e-2851.61THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA1.381e-2750.81THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878331 ID=FC878331; Name=FC878331; organism=Citrus clementina; type=EST; length=858bp
CCTAAATTTCCTCCTCAGCCTTCCTCTCTTTCTACTTTTCCTCTTAATTT
CTCTCTCTCTTATTACGATTTTATCTTTGATTTTCTATTTTCTGTTATAG
TAAAAAATGTCAAGCGCTTTAGATATGTCTCTTGACGATATCATCAAGAA
CAACAAAAAGTCTGGATCTGGCAACTTCCGGGGCCGGGGTCGAGGATCCG
GACCCGGCCCTGCTCGTCGCATCCCCAATCGTGGTGCAAACCGTGTGGCG
CCGTATACCACCGCCAAAGCGCCGGAGACGACGTGGCAGCACGATATGTT
TGCAGATCAGGTGAGTGCTTTCCCGGTACAGCAGGCGGGGCGGGCTTCAG
CTATAGAGACTGGAACGAAGCTGTACATATCAAATCTGGATTACGGTGTC
TCTAATGAAGACATCAAGGAACTGTTTTCTGAAGTTGGTGACTTGAAGCG
GTACTCAATCCATTATGATAGAAGTGGGAGATCAAAGGGAACGGCAGAGG
TTGTCTATTCACGACGAGCAGATGCTGTGGCTGCAGTCAAGAGATACAAC
AATGTGCAGCTTGATGGGAAGCCGATGAAAATTGAGATTGTGGGAACAAA
CATTGCAACCCGTACTGCAGCTCCAGCTGCTAATGTCAACTTTGGAAATT
CAAATGGTGTTCCTAGAGGTGGACAAGGAAGAGGTGGTGCATTCAGAAGG
CTTCGTGGAGGTGGGGGTGGCGGCGGCCGTGGATTTGGAAGAGGTCGTGG
ACGTGGAAGAGAACGTAATGAGAAGATATCTGCTGAAGATCTTGATGCTG
ATTTGGACAAGTATTATTCAGAAGCATCAGAGGCAATGCAGACAAATTGA
AGGCATTT
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