FC878336

Overview
NameFC878336
Unique NameFC878336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6013 contig Ccv1_Contig6013:1..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: Y2010_ARATH (LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.302e-54
Identity = 59/95 (62.11%), Postives = 78/95 (82.11%), Query Frame = 1
Query:  625 LSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNL 909
            LS++SI W  +A LK L +LSIS N L  LP  +G LT+L+ LDV+NNKLT+LP E+GLL++LE+LKANNNRI+ LPESIGNC+ L+E+DLS+N+
Sbjct:  188 LSDESIQWEGIASLKRLMLLSISHNNLTVLPSAMGSLTSLRQLDVTNNKLTSLPNELGLLTQLEILKANNNRITSLPESIGNCSFLMEVDLSANI 282          

HSP 2 Score: 111.309 bits (277), Expect = 3.302e-54
Identity = 63/115 (54.78%), Postives = 78/115 (67.83%), Query Frame = 2
Query:  245 GKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRK--TDRVRDMK-MVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQI 580
            GKVL    TL  + V +G KLML+ +QG+HQG+GPILKEA     SR   +D+V   K  V V K  ++RWKATGVIALA+ NLK IP+EVWDC   +RVLDI  N I+ VP +I
Sbjct:   58 GKVLVETSTLKQSDVGSGAKLMLMASQGLHQGEGPILKEASIRPISRTVVSDKVDQRKPSVLVDKNRTDRWKATGVIALAQANLKEIPEEVWDCGSGVRVLDISENFIKEVPAKI 172          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: LRRC1_MOUSE (Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.814e-12
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  652 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906
            ++  LK+L  L +S N L  LP  +  LT+L +L +S N L T+P  IG L KL +LK + NR++ LPE+IG+C +L E+ L+ N
Sbjct:  215 EIGNLKNLLCLDVSENRLERLPEEISGLTSLTYLVISQNLLETIPEGIGKLKKLSILKLDQNRLTQLPEAIGDCENLTELVLTEN 299          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: LRRC1_HUMAN (Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.369e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  652 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906
            ++  LK+L  L +S N L  LP  +  LT+L  L +S N L T+P  IG L KL +LK + NR++ LPE++G C SL E+ L+ N
Sbjct:  215 EIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTQLPEAVGECESLTELVLTEN 299          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: LRC40_CHICK (Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.892e-12
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  664 LKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906
            L  LTVL +  N L SLP  LG L  LQ LDVS+NKL ++P E+  LS L+ L   +N +S LP+  G   SL E+DLS+N
Sbjct:  104 LPALTVLDVHDNQLTSLPSALGQLENLQKLDVSHNKLKSIPEELLQLSHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNN 184          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEEL (Leucine-rich repeat protein soc-2 OS=Caenorhabditis elegans GN=soc-2 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  655 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906
            + KL +L +L +S N L  LP  +G+L  L+ LD+  N+L T+PTEIG L  L  L   +N+I  LP SIGN  SL ++ L  N
Sbjct:  394 IEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSLQDLRLGEN 477          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SCRIB_DANRE (Protein scribble homolog OS=Danio rerio GN=scrib PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  652 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNL 909
            +L  L+ L  L +S N L+ LP  +  L AL  L +S N L  LP  IG L KL +LK N NR+  L +SIG C +L E+ L+ NL
Sbjct:  215 ELGNLRQLVCLDVSENRLSELPTEISGLIALTDLLLSENLLEILPDSIGSLKKLSILKVNQNRLVHLTDSIGECENLTELMLTENL 300          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SUR8_CULQU (Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.017e-11
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  655 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906
            L  L  LT+LS+  N ++ LP  +GHL  L  LD+S+N L  LP  IG    L  L   +N +  +PE+IGN  +L  + L  N
Sbjct:  258 LKNLSSLTMLSLRENKIHELPAAIGHLRNLTTLDLSHNHLKHLPEAIGNCVNLTALDLQHNDLLDIPETIGNLANLQRLGLRYN 341          

HSP 2 Score: 30.0314 bits (66), Expect = 3.017e-11
Identity = 20/67 (29.85%), Postives = 34/67 (50.75%), Query Frame = 2
Query:  464 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXANDYPMIPLAGYNLQN 664
            +AL E++L ++PD + +    ++VLD+R N +  +PD I             N    I + G NL+N
Sbjct:  198 LALNENSLTSLPDSLQNLKA-LKVLDLRHNKLSEIPDVIYKLHTLTTLYLRFN---RIKVVGDNLKN 260          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEBR (Leucine-rich repeat protein soc-2 OS=Caenorhabditis briggsae GN=soc-2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  655 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906
            + KL +L +L +S N L  LP  +G+L  L+ LD+  N+L T+PTEIG L  L  L   +N+I  LP SIGN  SL ++ L  N
Sbjct:  394 IEKLVNLEILVLSNNQLKKLPNQIGNLKKLRELDLEENELETVPTEIGFLQHLTKLWVQSNKIVTLPRSIGNLCSLQDLRLGEN 477          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SHOC2_NEMVE (Leucine-rich repeat protein soc-2 homolog OS=Nematostella vectensis GN=v1g189306 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 3.925e-11
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 1
Query:  655 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906
            +  LK L  LS+  N +  LP ++G L  L  LD+S+N +  LP EIG    +  L   +N I  LP+SIG  T++  + L  N
Sbjct:  197 IGNLKLLERLSLRENKIKILPRVIGQLVHLVTLDISHNHIENLPAEIGNCVHMTSLDLQHNDIPSLPDSIGRLTAMTRLGLRYN 280          

HSP 2 Score: 32.7278 bits (73), Expect = 3.925e-11
Identity = 16/39 (41.03%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  464 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQI 580
            +AL+E+NL  +PD +   +  ++VLD+R N I+ +PD I
Sbjct:  137 LALSENNLTTLPDNLVKLTK-LKVLDLRHNKIKEIPDVI 174          
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: PIDD_HUMAN (Leucine-rich repeat and death domain-containing protein OS=Homo sapiens GN=LRDD PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.834e-11
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  661 KLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906
            +++ L  L +S NCL+ LP  LG L AL  L V++N+L TLP  +G LS L+ L  + N +  LP  IG   SL+E++L+SN
Sbjct:  146 QMRGLGALLLSHNCLSELPEALGALPALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGSLLELNLASN 227          
The following BLAST results are available for this feature:
BLAST of FC878336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
Y2010_ARATH3.302e-5462.11LRR repeats and ubiquitin-like domain-containing p... [more]
LRRC1_MOUSE1.814e-1243.53Leucine-rich repeat-containing protein 1 OS=Mus mu... [more]
LRRC1_HUMAN2.369e-1243.53Leucine-rich repeat-containing protein 1 OS=Homo s... [more]
LRC40_CHICK6.892e-1249.38Leucine-rich repeat-containing protein 40 OS=Gallu... [more]
SHOC2_CAEEL2.619e-1144.05Leucine-rich repeat protein soc-2 OS=Caenorhabditi... [more]
SCRIB_DANRE2.619e-1144.19Protein scribble homolog OS=Danio rerio GN=scrib P... [more]
SUR8_CULQU3.017e-1139.29Leucine-rich repeat protein soc-2 homolog OS=Culex... [more]
SHOC2_CAEBR3.420e-1144.05Leucine-rich repeat protein soc-2 OS=Caenorhabditi... [more]
SHOC2_NEMVE3.925e-1136.90Leucine-rich repeat protein soc-2 homolog OS=Nemat... [more]
PIDD_HUMAN5.834e-1143.90Leucine-rich repeat and death domain-containing pr... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878336 ID=FC878336; Name=FC878336; organism=Citrus clementina; type=EST; length=910bp
CACAAGACACAATCACACAACACGCGCACGGCACAGCTCTCAAATTCTCA
AAAACCCTAAGCCACTAAGCCAGCCACCCAGCCCGCCGCCGAATCAGCCA
GCAGCATCGTGACTGTCGACGCACGCCAGCCAATCAGCCGCGTCTCGCCG
TCGTGTTGTCTCACCGTTGCGTCTCGCTGTCGCGTCTCACTGTTGTGTTT
CTCTCCATCGTGACTCGCCATCGTGACCATCCGCGACGCCGCTAGGGAAG
GTTTTGGCGAATGAAGAGACTTTGGGAGTAGCTGGGGTTACAAATGGAGT
TAAGCTCATGCTAATTGGCACTCAGGGTGTGCATCAAGGGGATGGCCCTA
TATTGAAAGAAGCTCAGAGCCCTATTACTTCAAGGAAGACTGATAGAGTG
AGAGACATGAAGATGGTTCCGGTTGGCAAGACCTCTTCAGAAAGGTGGAA
GGCTACTGGAGTAATAGCGTTGGCCGAACACAACTTGAAGGCTATTCCAG
ATGAAGTATGGGATTGCTCACCTTTTATAAGAGTCCTTGATATCAGAACC
AACTCCATTCAGTGTGTTCCAGACCAAATTGATGGTTTGACTGGCTTGAA
GAAACTGCTCCTTGACGCAAATGATTATCCAATGATTCCATTAGCTGGGT
ACAACTTGCAAAATTGAAGCATCTAACGGTTCTATCTATTAGCCGAAACT
GCTTGAACTCTTTGCCTGGCATATTGGGTCATCTGACTGCCCTGCAGCAT
CTAGATGTCTCAAACAACAAGTTAACTACCCTCCCAACTGAAATTGGACT
TTTGAGTAAACTTGAAGTTTTGAAAGCCAACAACAATAGGATAAGCTTTC
TTCCTGAGAGTATAGGCAATTGCACTTCCCTTATTGAGATTGATCTTTCA
TCAAATCTTC
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