FC878336
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: Y2010_ARATH (LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.302e-54 Identity = 59/95 (62.11%), Postives = 78/95 (82.11%), Query Frame = 1 Query: 625 LSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNL 909 LS++SI W +A LK L +LSIS N L LP +G LT+L+ LDV+NNKLT+LP E+GLL++LE+LKANNNRI+ LPESIGNC+ L+E+DLS+N+ Sbjct: 188 LSDESIQWEGIASLKRLMLLSISHNNLTVLPSAMGSLTSLRQLDVTNNKLTSLPNELGLLTQLEILKANNNRITSLPESIGNCSFLMEVDLSANI 282 HSP 2 Score: 111.309 bits (277), Expect = 3.302e-54 Identity = 63/115 (54.78%), Postives = 78/115 (67.83%), Query Frame = 2 Query: 245 GKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRK--TDRVRDMK-MVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQI 580 GKVL TL + V +G KLML+ +QG+HQG+GPILKEA SR +D+V K V V K ++RWKATGVIALA+ NLK IP+EVWDC +RVLDI N I+ VP +I Sbjct: 58 GKVLVETSTLKQSDVGSGAKLMLMASQGLHQGEGPILKEASIRPISRTVVSDKVDQRKPSVLVDKNRTDRWKATGVIALAQANLKEIPEEVWDCGSGVRVLDISENFIKEVPAKI 172
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: LRRC1_MOUSE (Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.814e-12 Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 652 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906 ++ LK+L L +S N L LP + LT+L +L +S N L T+P IG L KL +LK + NR++ LPE+IG+C +L E+ L+ N Sbjct: 215 EIGNLKNLLCLDVSENRLERLPEEISGLTSLTYLVISQNLLETIPEGIGKLKKLSILKLDQNRLTQLPEAIGDCENLTELVLTEN 299
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: LRRC1_HUMAN (Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.369e-12 Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 652 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906 ++ LK+L L +S N L LP + LT+L L +S N L T+P IG L KL +LK + NR++ LPE++G C SL E+ L+ N Sbjct: 215 EIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTQLPEAVGECESLTELVLTEN 299
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: LRC40_CHICK (Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.892e-12 Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 1 Query: 664 LKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906 L LTVL + N L SLP LG L LQ LDVS+NKL ++P E+ LS L+ L +N +S LP+ G SL E+DLS+N Sbjct: 104 LPALTVLDVHDNQLTSLPSALGQLENLQKLDVSHNKLKSIPEELLQLSHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNN 184
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEEL (Leucine-rich repeat protein soc-2 OS=Caenorhabditis elegans GN=soc-2 PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 655 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906 + KL +L +L +S N L LP +G+L L+ LD+ N+L T+PTEIG L L L +N+I LP SIGN SL ++ L N Sbjct: 394 IEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSLQDLRLGEN 477
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SCRIB_DANRE (Protein scribble homolog OS=Danio rerio GN=scrib PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11 Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1 Query: 652 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNL 909 +L L+ L L +S N L+ LP + L AL L +S N L LP IG L KL +LK N NR+ L +SIG C +L E+ L+ NL Sbjct: 215 ELGNLRQLVCLDVSENRLSELPTEISGLIALTDLLLSENLLEILPDSIGSLKKLSILKVNQNRLVHLTDSIGECENLTELMLTENL 300
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SUR8_CULQU (Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 3.017e-11 Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1 Query: 655 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906 L L LT+LS+ N ++ LP +GHL L LD+S+N L LP IG L L +N + +PE+IGN +L + L N Sbjct: 258 LKNLSSLTMLSLRENKIHELPAAIGHLRNLTTLDLSHNHLKHLPEAIGNCVNLTALDLQHNDLLDIPETIGNLANLQRLGLRYN 341 HSP 2 Score: 30.0314 bits (66), Expect = 3.017e-11 Identity = 20/67 (29.85%), Postives = 34/67 (50.75%), Query Frame = 2 Query: 464 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXANDYPMIPLAGYNLQN 664 +AL E++L ++PD + + ++VLD+R N + +PD I N I + G NL+N Sbjct: 198 LALNENSLTSLPDSLQNLKA-LKVLDLRHNKLSEIPDVIYKLHTLTTLYLRFN---RIKVVGDNLKN 260
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEBR (Leucine-rich repeat protein soc-2 OS=Caenorhabditis briggsae GN=soc-2 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.420e-11 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 655 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906 + KL +L +L +S N L LP +G+L L+ LD+ N+L T+PTEIG L L L +N+I LP SIGN SL ++ L N Sbjct: 394 IEKLVNLEILVLSNNQLKKLPNQIGNLKKLRELDLEENELETVPTEIGFLQHLTKLWVQSNKIVTLPRSIGNLCSLQDLRLGEN 477
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: SHOC2_NEMVE (Leucine-rich repeat protein soc-2 homolog OS=Nematostella vectensis GN=v1g189306 PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 3.925e-11 Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 1 Query: 655 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906 + LK L LS+ N + LP ++G L L LD+S+N + LP EIG + L +N I LP+SIG T++ + L N Sbjct: 197 IGNLKLLERLSLRENKIKILPRVIGQLVHLVTLDISHNHIENLPAEIGNCVHMTSLDLQHNDIPSLPDSIGRLTAMTRLGLRYN 280 HSP 2 Score: 32.7278 bits (73), Expect = 3.925e-11 Identity = 16/39 (41.03%), Postives = 27/39 (69.23%), Query Frame = 2 Query: 464 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQI 580 +AL+E+NL +PD + + ++VLD+R N I+ +PD I Sbjct: 137 LALSENNLTTLPDNLVKLTK-LKVLDLRHNKIKEIPDVI 174
BLAST of FC878336 vs. ExPASy Swiss-Prot
Match: PIDD_HUMAN (Leucine-rich repeat and death domain-containing protein OS=Homo sapiens GN=LRDD PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.834e-11 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 661 KLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSN 906 +++ L L +S NCL+ LP LG L AL L V++N+L TLP +G LS L+ L + N + LP IG SL+E++L+SN Sbjct: 146 QMRGLGALLLSHNCLSELPEALGALPALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGSLLELNLASN 227 The following BLAST results are available for this feature:
BLAST of FC878336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878336 ID=FC878336; Name=FC878336; organism=Citrus clementina; type=EST; length=910bpback to top |