FC878341

Overview
NameFC878341
Unique NameFC878341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2462 contig Ccv1_Contig2462:1..911. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: UTH1_YEAST (Protein UTH1 OS=Saccharomyces cerevisiae GN=UTH1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.366e-34
Identity = 75/171 (43.86%), Postives = 95/171 (55.56%), Query Frame = 2
Query:  392 FPDGEIDCSDFPSDYGAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANL-TCPDATYYEWTGK 901
            F DG I CSDFPS  GAVSL++LGLGGW  I             N  T T         C +G YCSYAC  GY K  WP+ Q   G+SVGGL CKNGKL ++N +  +LC+ G      +  N++S S A+C TDYPG+E+  VP     GS   +    + +YY+W GK
Sbjct:  109 FEDGTISCSDFPSGQGAVSLDWLGLGGWASIMD----------MNGNTATS--------CQDGYYCSYACSPGYAKTQWPSEQPSDGRSVGGLYCKNGKLYRSNTDTNSLCVEGQGSAQAV--NKVSGSIAICGTDYPGSENMVVPTVVGAGSSQPINVIKEDSYYQWQGK 259          
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: UTH1_YEAS7 (Protein UTH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=UTH1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.366e-34
Identity = 75/171 (43.86%), Postives = 95/171 (55.56%), Query Frame = 2
Query:  392 FPDGEIDCSDFPSDYGAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANL-TCPDATYYEWTGK 901
            F DG I CSDFPS  GAVSL++LGLGGW  I             N  T T         C +G YCSYAC  GY K  WP+ Q   G+SVGGL CKNGKL ++N +  +LC+ G      +  N++S S A+C TDYPG+E+  VP     GS   +    + +YY+W GK
Sbjct:  106 FEDGTISCSDFPSGQGAVSLDWLGLGGWASIMD----------MNGNTATS--------CQDGYYCSYACSPGYAKTQWPSEQPSDGRSVGGLYCKNGKLYRSNTDTNSLCVEGQGSAQAV--NKVSGSIAICGTDYPGSENMVVPTVVGAGSSQPINVIKEDSYYQWQGK 256          
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: UTH1_YEAS6 (Protein UTH1 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=UTH1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 8.366e-34
Identity = 75/171 (43.86%), Postives = 95/171 (55.56%), Query Frame = 2
Query:  392 FPDGEIDCSDFPSDYGAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANL-TCPDATYYEWTGK 901
            F DG I CSDFPS  GAVSL++LGLGGW  I             N  T T         C +G YCSYAC  GY K  WP+ Q   G+SVGGL CKNGKL ++N +  +LC+ G      +  N++S S A+C TDYPG+E+  VP     GS   +    + +YY+W GK
Sbjct:  106 FEDGTISCSDFPSGQGAVSLDWLGLGGWASIMD----------MNGNTATS--------CQDGYYCSYACSPGYAKTQWPSEQPSDGRSVGGLYCKNGKLYRSNTDTNSLCVEGQGSAQAV--NKVSGSIAICGTDYPGSENMVVPTVVGAGSSQPINVIKEDSYYQWQGK 256          
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: UTH1_YEAS1 (Protein UTH1 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=UTH1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.366e-34
Identity = 75/171 (43.86%), Postives = 95/171 (55.56%), Query Frame = 2
Query:  392 FPDGEIDCSDFPSDYGAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANL-TCPDATYYEWTGK 901
            F DG I CSDFPS  GAVSL++LGLGGW  I             N  T T         C +G YCSYAC  GY K  WP+ Q   G+SVGGL CKNGKL ++N +  +LC+ G      +  N++S S A+C TDYPG+E+  VP     GS   +    + +YY+W GK
Sbjct:  106 FEDGTISCSDFPSGQGAVSLDWLGLGGWASIMD----------MNGNTATS--------CQDGYYCSYACSPGYAKTQWPSEQPSDGRSVGGLYCKNGKLYRSNTDTNSLCVEGQGSAQAV--NKVSGSIAICGTDYPGSENMVVPTVVGAGSSQPINVIKEDSYYQWQGK 256          
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: YBOH_SCHPO (Uncharacterized SUN family protein C2G2.17c OS=Schizosaccharomyces pombe GN=SPBC2G2.17c PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.082e-33
Identity = 75/175 (42.86%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  383 DTTFPDGEIDCSDFPSDY-GAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANLTCPDA-TYYEWTGK 901
            D  FPDG  DCS FP D  G V L+YLG GGW+G+Q                      G  + C +  YCSYAC  G  K  WP+ Q   G SVGGL CKNGKL  T  +   LC  G    T  V+N +S++ A+CRTDYPGTE+  +P   + GS   L+  D  +YY W GK
Sbjct:   56 DGGFPDGVYDCSSFPDDQNGVVRLDYLGFGGWSGVQK----------------NDGKYGTASTCQDNTYCSYACKPGMSKTQWPSEQPDNGVSVGGLYCKNGKLYLTQKDNSNLCEDGKG--TAYVKNTLSSNVAICRTDYPGTENMNIPTNIDGGSKQPLSDVDEDSYYNWGGK 212          
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: PSU1_SCHPO (Cell wall synthesis protein psu1 OS=Schizosaccharomyces pombe GN=psu1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.995e-32
Identity = 73/172 (42.44%), Postives = 95/172 (55.23%), Query Frame = 2
Query:  392 FPDGEIDCSDFPSDY-GAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANLTCPD-ATYYEWTGK 901
            F DG  DC+DFPSD  G V+L+YLG GG++GIQ                      G  + C EG YCSYAC  G  K  WP+TQ   G++ GGLLCK GKL +TN  Y  LC  G    T  V+N +    A+C+TDYPG+E+  +P     G+ + L+  D A Y++W GK
Sbjct:  162 FQDGVYDCTDFPSDQSGVVALDYLGYGGYSGIQIGD-------------------GAGSSCVEGAYCSYACSPGMLKTQWPSTQPSDGETRGGLLCKGGKLYRTNTAYDNLCENGVG--TASVQNTLGQGVAICQTDYPGSENMVIPTYVGGGATSPLSVTDNANYFQWEGK 312          
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: SIM1_YEAST (Protein SIM1 OS=Saccharomyces cerevisiae GN=SIM1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.976e-31
Identity = 71/176 (40.34%), Postives = 97/176 (55.11%), Query Frame = 2
Query:  377 GLDTTFPDGEIDCSDFPSDYGAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANLTCPDA-TYYEWTGK 901
            G    F DG I C  FPS  G +S++++G GGW+G+++                T ++ GG+  C EG YCSY+C  G  K  WP+ Q   G+SVGGLLCKNG L ++N +   LC  G     V+  +++S   A+CRTDYPGTE+  +P     GS   LT  D  TY+ W GK
Sbjct:  213 GPSEKFQDGTIPCDKFPSGQGVISIDWIGEGGWSGVEN----------------TDTSTGGS--CKEGSYCSYSCQPGMSKTQWPSDQPSDGRSVGGLLCKNGYLYRSNTDADYLCEWGVEAAYVV--SKLSKGVAICRTDYPGTENMVIPTYVEGGSSLPLTVVDQDTYFTWEGK 368          
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: NCA3_YEAST (Protein NCA3, mitochondrial OS=Saccharomyces cerevisiae GN=NCA3 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.976e-31
Identity = 72/174 (41.38%), Postives = 94/174 (54.02%), Query Frame = 2
Query:  383 DTTFPDGEIDCSDFPSDYGAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANLTCPDA-TYYEWTGK 901
            D  F DG + CSDFPS  G VSL++LG GGW  +             +++  T S C       +G YCSYAC  G  K  WP+ Q   G+SVGGL CKNG L +TN +   LC T   E +    N+ S S A+CRTDYPG+E+  +P   + G    ++  D  TYY+W GK
Sbjct:   78 DGGFQDGTVKCSDFPSVNGIVSLDWLGFGGWASVM------------DMDANTSSEC------KDGYYCSYACEPGMSKTQWPSDQPSDGKSVGGLYCKNGYLYRTNTDTSDLCST--DETSAKAINKKSDSIALCRTDYPGSENMVIPTVVDGGDSQPISVVDEDTYYQWQGK 231          
BLAST of FC878341 vs. ExPASy Swiss-Prot
Match: SUN4_YEAST (Septation protein SUN4 OS=Saccharomyces cerevisiae GN=SUN4 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.329e-30
Identity = 68/170 (40.00%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  392 FPDGEIDCSDFPSDYGAVSLNYLGLGGWTGIQSPXXXXXXXXXTNIETVTKSNCGGTNCCSEGMYCSYACPAGYQKAHWPTTQGLTGQSVGGLLCKNGKLRKTNPNYKTLCITGSSEVTVLVRNEMSTSAAVCRTDYPGTESETVPVTANPGSVANLTCPDA-TYYEWTG 898
            F DG I C  FPS  G + +++L  GGW+G+++                T ++ GG+  C EG YCSYAC  G  K  WP+ Q   G+S+GGLLCK+G L ++N +   LC  G     V+  +E+S   A+CRTDYPGTE+  +P     G    LT  D  TYY W G
Sbjct:  163 FEDGTIPCGQFPSGQGVIPISWLDEGGWSGVEN----------------TDTSTGGS--CKEGSYCSYACQPGMSKTQWPSDQPSDGRSIGGLLCKDGYLYRSNTDTDYLCEWGVDAAYVV--SELSNDVAICRTDYPGTENMVIPTYVQAGDSLPLTVVDQDTYYTWQG 312          
The following BLAST results are available for this feature:
BLAST of FC878341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
UTH1_YEAST8.366e-3443.86Protein UTH1 OS=Saccharomyces cerevisiae GN=UTH1 P... [more]
UTH1_YEAS78.366e-3443.86Protein UTH1 OS=Saccharomyces cerevisiae (strain Y... [more]
UTH1_YEAS68.366e-3443.86Protein UTH1 OS=Saccharomyces cerevisiae (strain A... [more]
UTH1_YEAS18.366e-3443.86Protein UTH1 OS=Saccharomyces cerevisiae (strain R... [more]
YBOH_SCHPO7.082e-3342.86Uncharacterized SUN family protein C2G2.17c OS=Sch... [more]
PSU1_SCHPO5.995e-3242.44Cell wall synthesis protein psu1 OS=Schizosaccharo... [more]
SIM1_YEAST2.976e-3140.34Protein SIM1 OS=Saccharomyces cerevisiae GN=SIM1 P... [more]
NCA3_YEAST2.976e-3141.38Protein NCA3, mitochondrial OS=Saccharomyces cerev... [more]
SUN4_YEAST7.329e-3040.00Septation protein SUN4 OS=Saccharomyces cerevisiae... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA12AH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878341 ID=FC878341; Name=FC878341; organism=Citrus clementina; type=EST; length=911bp
CCATGCTCACCACCAGCACCACCAGGAGATGAAGCGCGATGATGCTACCG
CAACCGAGAACGTCGACGTCTTCGTCGCTGGACCCACGGTTGTCATGTAC
TCGCTCAATGGCAACATCATCTCCGAGAACGATGTTCTCGAGGGTATCAA
GAACGGCACCCTCGTCTGGGCCAACGGTGCTCCCTCCCTGGCCGACCCCT
CGTCCTCGGTCGTTGCTTCTACCTCGTCTGCCGTTGCTGCCGCCAGCACC
ACCTTCCTCACCTCGACCTCGTCTAGCTATTCATCCTCGTCCAGCTCGAC
CAGCTTCTCGACCAGCACCAGTGTTTCGTCTTCCAAGCAGAGCGCAACCT
CGTCTGCCGCCTCTTCCTCCGCAACTGGTCTTGACACCACCTTCCCCGAT
GGTGAGATTGACTGCTCCGACTTCCCTTCGGACTACGGTGCTGTTTCTCT
CAACTACCTCGGCCTCGGTGGCTGGACCGGTATCCAATCCCCTGGCTCTG
GAAGCTCCCTTCTTGGACTCACCAACATTGAGACCGTTACCAAGTCAAAC
TGCGGTGGCACCAACTGCTGCTCCGAGGGCATGTACTGCTCGTACGCCTG
CCCTGCTGGTTACCAAAAGGCCCACTGGCCCACTACCCAGGGCTTGACCG
GTCAGTCTGTCGGTGGACTTCTCTGCAAGAACGGCAAGCTCCGCAAGACC
AACCCCAACTACAAGACCCTTTGTATCACTGGTTCCTCTGAGGTTACTGT
TCTTGTTCGCAACGAGATGTCCACCAGCGCCGCTGTCTGCCGTACCGACT
ACCCCGGTACCGAGAGCGAGACTGTCCCCGTCACTGCCAACCCTGGCAGC
GTTGCTAACCTGACCTGTCCCGATGCCACTTACTACGAGTGGACTGGCAA
GACACCTCTGC
back to top