FC878349

Overview
NameFC878349
Unique NameFC878349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length926
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4297 contig Ccv1_Contig4297:680..1606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878349 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.826e-37
Identity = 89/219 (40.64%), Postives = 120/219 (54.79%), Query Frame = 3
Query:  102 VSYKECLKNHAASLGGHALDGCGEFMPSPTATSNDPASLNCAACGCHRNFHRRDPYEPNAAATHRLPPAATASHSTDPSTVPSPDTNTNSPQHHQPVTSPTPCSYYSSAPHMLLALSTGFSAPPDDGDDNXXXXXXXXXXXXXFNQVLAANSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 758
            + Y+ECLKNHA ++GGHA+DGC EFMPS    + D  +L CAACGCHRNFHR++  E      HR+P     ++   P            PQ HQP     P   + ++P      +  +  P   GD+                     +SS    KR RTKFT EQKEKML+FAERLGW++ + ++   + FC+E GV R+V K+WMHNNKN+ G+K
Sbjct:   47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLD--ALKCAACGCHRNFHRKET-ESIGGRAHRVP-----TYYNRP------------PQPHQP-----PGYLHLTSP------AAPYRPPAASGDEEDTSNP---------------SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKK 219          
BLAST of FC878349 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.330e-36
Identity = 86/220 (39.09%), Postives = 119/220 (54.09%), Query Frame = 3
Query:  108 YKECLKNHAASLGGHALDGCGEFMPSPTATSNDPASLNCAACGCHRNFHRRD-PYEPNAAATHRLPPAATASHSTDPSTVPSPDTNTNSPQHHQPVTSPTPCSYY---SSAPHMLLALSTGFSAPPDDGDDNXXXXXXXXXXXXXFNQVLAANSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGR 755
            ++ECLKN A ++GGHA+DGCGEFMP+    + D  +L CAACGCHRNFHR++ PY  +A   H+ PP     +                         P P SY    S AP + LAL      PP   + +               +  +A +    +KR RTKFT EQKE+ML+ AER+GW++ R ++++ Q FC E GV R+V KVW+HNNK+  G+
Sbjct:   75 FRECLKNQAVNIGGHAVDGCGEFMPAGIEGTID--ALKCAACGCHRNFHRKELPYFHHAPPQHQPPPPPPGFYRL-----------------------PAPVSYRPPPSQAPPLQLAL------PPPQRERSEDPM-----------ETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGK 252          
The following BLAST results are available for this feature:
BLAST of FC878349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH2.826e-3740.64ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH5.330e-3639.09ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA65DC01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878349 ID=FC878349; Name=FC878349; organism=Citrus clementina; type=EST; length=926bp
ATACAGAAACAGAGTCCCCACCAAAAATAATCCTCCCCAAGAACAAAAAG
TCTCAATCTTTTTACACCAGCAGCTCATTTGTACCACCACTACAAATGGT
GGTTTCTTACAAAGAATGTCTGAAAAATCATGCTGCTAGCCTTGGTGGAC
ATGCCTTGGATGGGTGTGGTGAATTCATGCCTAGCCCCACAGCAACCTCT
AATGATCCCGCATCCCTCAACTGCGCCGCCTGTGGCTGTCACCGCAACTT
CCACCGCCGTGACCCTTATGAACCCAACGCCGCCGCCACTCACCGTTTGC
CTCCAGCAGCAACAGCAAGTCACAGCACAGACCCCAGCACGGTTCCAAGC
CCAGACACAAACACAAACTCACCTCAACATCACCAGCCAGTTACCTCACC
AACTCCTTGCTCTTACTACTCATCTGCGCCCCACATGCTGCTGGCTCTCA
GCACTGGCTTCTCTGCACCGCCTGATGATGGTGATGATAATCATCCTCGT
CATCATCATTATCCCCAGCACCAGCCTCCCTTCAATCAAGTGCTTGCTGC
AAATTCATCAGATAATGGAAAGAAGAGATCAAGAACAAAGTTTACACAAG
AGCAGAAAGAAAAAATGTTATCTTTTGCCGAAAGGCTAGGCTGGAAGATG
AACAGAGCTGAAGAGAAATTGACCCAAGATTTCTGCAGTGAAGTTGGTGT
TAGCAGACGCGTGTTCAAAGTCTGGATGCATAACAACAAGAACGCTTCCG
GGAGAAAAGATCAGAGGAGTATCAATAACAAGAACATTAATGACATTGTC
AATGGTTGCAGCAGGGTTAGTTTTGACGTCAATGGCAACTGCAAAAACAC
AATGACGGAAATGGAAACGGTAGTGTTGCTGTGGCTCCTAAATGTGAAGA
GTAAATTAAATTAATGAACAAGTTGC
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