FC878355

Overview
NameFC878355
Unique NameFC878355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length874
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12305 contig Ccv1_Contig12305:19..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878355 vs. ExPASy Swiss-Prot
Match: TAZ_SAISC (Tafazzin OS=Saimiri sciureus GN=TAZ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 50/164 (30.49%), Postives = 74/164 (45.12%), Query Frame = 1
Query:  382 MLQAVAVPVIGNVCHIFMHGLNSVQVYGLEKLHDALLRRPKNKPLITVSNHVASVDDPFVIASLLPPRVLLDAQNLRWTLCATDRCFKNPATTAFFRSVKVLPVSRGDGIYQKL*FKDPFF*LVAQECLSPEIEK*SLSACFLCMLQGMDMAIAKLNSGGWVHI 873
            +  +V + ++G     +   +N + V+  E L++ +  R    PLITVSNH + +DDP  +  +L  R + + + +RWT  A D CF     + FF   K +PV RGDG+YQK                                  GMD  + KLN G WVHI
Sbjct:   19 LASSVVMGLVGTYSCFWTKYMNHLTVHNKEVLYELIENRGPATPLITVSNHQSCMDDPH-LWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGDGVYQK----------------------------------GMDFILEKLNHGDWVHI 147          
BLAST of FC878355 vs. ExPASy Swiss-Prot
Match: TAZ_MACMU (Tafazzin OS=Macaca mulatta GN=TAZ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 50/164 (30.49%), Postives = 74/164 (45.12%), Query Frame = 1
Query:  382 MLQAVAVPVIGNVCHIFMHGLNSVQVYGLEKLHDALLRRPKNKPLITVSNHVASVDDPFVIASLLPPRVLLDAQNLRWTLCATDRCFKNPATTAFFRSVKVLPVSRGDGIYQKL*FKDPFF*LVAQECLSPEIEK*SLSACFLCMLQGMDMAIAKLNSGGWVHI 873
            +  +V + ++G     +   +N + V+  E L++ +  R    PLITVSNH + +DDP  +  +L  R + + + +RWT  A D CF     + FF   K +PV RGDG+YQK                                  GMD  + KLN G WVHI
Sbjct:   19 LASSVVMGLVGTYSCFWTKYMNHLTVHNKEVLYELIENRGPATPLITVSNHQSCMDDPH-LWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGDGVYQK----------------------------------GMDFILEKLNHGDWVHI 147          
BLAST of FC878355 vs. ExPASy Swiss-Prot
Match: TAZ_ERYPA (Tafazzin OS=Erythrocebus patas GN=TAZ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 50/164 (30.49%), Postives = 74/164 (45.12%), Query Frame = 1
Query:  382 MLQAVAVPVIGNVCHIFMHGLNSVQVYGLEKLHDALLRRPKNKPLITVSNHVASVDDPFVIASLLPPRVLLDAQNLRWTLCATDRCFKNPATTAFFRSVKVLPVSRGDGIYQKL*FKDPFF*LVAQECLSPEIEK*SLSACFLCMLQGMDMAIAKLNSGGWVHI 873
            +  +V + ++G     +   +N + V+  E L++ +  R    PLITVSNH + +DDP  +  +L  R + + + +RWT  A D CF     + FF   K +PV RGDG+YQK                                  GMD  + KLN G WVHI
Sbjct:   19 LASSVVMGLVGTYSCFWTKYMNHLTVHNKEVLYELIENRGPATPLITVSNHQSCMDDPH-LWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVPVCRGDGVYQK----------------------------------GMDFILEKLNHGDWVHI 147          
BLAST of FC878355 vs. ExPASy Swiss-Prot
Match: TAZ_DROME (Tafazzin homolog OS=Drosophila melanogaster GN=Taz PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  400 VPVIGNVCHIFMHGLNSVQVYGLEKLHDALLRRPKNKPLITVSNHVASVDDPFVIASLLPPRVLLDAQNLRWTLCATDRCFKNPATTAFFRSVKVLPVSRGDGIYQ 717
            V  +G    + +  LN  +VY  E+L   + +RPK  PL+TVSNH +  DDP  +   LP  ++ +   +RW++ A D CF N   + FF   K +PV RG G+YQ
Sbjct:  144 VSAVGIFSKVVLMFLNKPRVYNRERLIQLITKRPKGIPLVTVSNHYSCFDDP-GLWGCLPLGIVCNTYKIRWSMAAHDICFTNKLHSLFFMFGKCIPVVRGIGVYQ 248          
BLAST of FC878355 vs. ExPASy Swiss-Prot
Match: TAZ1_DICDI (Putative lysophosphatidylcholine acyltransferase OS=Dictyostelium discoideum GN=taz PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 46/157 (29.30%), Postives = 80/157 (50.96%), Query Frame = 1
Query:  406 VIGNVCHIFMHGLNSVQVYGLEKLHDALLRRPKNK-PLITVSNHVASVDDPFVIASLLPPRVLLDAQNLRWTLCATDRCFKNPATTAFFRSVKVLPVSRGDGIYQKL*FKDPFF*LVAQECLSPEIEK*SLSACFLCMLQGMDMAIAKLNSGGWVHI 873
            ++G +C  ++  +N+V   G++KL + + +  + K P+IT++NH +++DDP ++  +LP R+L+D    RWTL A++  F N   + FF   K + + RGDGIYQ                                   GM+ +I +L+ G W+HI
Sbjct:   32 LVGVLCKFWI-SMNTVTTSGIDKLVNEIDKTHQLKRPMITIANHSSNLDDP-LLWGVLPNRILMDPSKQRWTLGASNILFTNWFYSKFFSLGKCIKIVRGDGIYQ----------------------------------DGMNESIDRLSEGQWLHI 152          
The following BLAST results are available for this feature:
BLAST of FC878355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TAZ_SAISC6.891e-1430.49Tafazzin OS=Saimiri sciureus GN=TAZ PE=3 SV=1[more]
TAZ_MACMU6.891e-1430.49Tafazzin OS=Macaca mulatta GN=TAZ PE=2 SV=1[more]
TAZ_ERYPA6.891e-1430.49Tafazzin OS=Erythrocebus patas GN=TAZ PE=2 SV=1[more]
TAZ_DROME1.175e-1337.74Tafazzin homolog OS=Drosophila melanogaster GN=Taz... [more]
TAZ1_DICDI1.100e-1129.30Putative lysophosphatidylcholine acyltransferase O... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA53BG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878355 ID=FC878355; Name=FC878355; organism=Citrus clementina; type=EST; length=874bp
CGCCTCTCTCTCACTGTTCCTCCAAATTCTCAAACATCAGATCAAAAGCT
AAATCGCGTCAAAGTAAATTAGGAAAAAAATACAAAATTTTGTTAAAAAT
TATTGAACATGAGCGTACAGAGAATAGAACGAGGAGATCTGTGGAAGAAC
AAGGCACGTGCGCTTCAGCTGCAACTCAGGGACCGCTTCCGTGTGGCGGT
GGACAAGCATCGCCGCCGCCCGGCGATATTTTCTCAAAATGGTTCATTTT
CGTCGACCGTCGAACGCTGGTTACGTCTGTTTCGTGACTTTCGCCGTGAT
TCGCTCCCTTCCACTTCCACTTTTTATCGCAAGCGAGTGACTAAAGACTT
AAATGCGGAGGAGGACTGTGTTATTCATCGCATGCTTCAAGCTGTGGCAG
TTCCTGTCATTGGAAATGTCTGTCATATCTTTATGCACGGCCTTAATAGT
GTTCAGGTGTATGGTTTGGAGAAGTTACACGATGCATTGTTACGCAGACC
CAAGAACAAGCCTTTAATAACAGTCAGCAACCATGTTGCCTCTGTGGATG
ATCCATTTGTTATTGCTTCGTTACTTCCTCCCAGAGTTCTTTTGGATGCT
CAGAACTTAAGATGGACACTCTGTGCAACTGATCGGTGTTTTAAAAATCC
TGCTACTACTGCATTCTTCAGAAGTGTCAAAGTGTTGCCGGTTTCTCGCG
GTGACGGGATCTATCAGAAGTTATGATTTAAGGATCCTTTCTTTTAGTTA
GTAGCTCAAGAATGTTTGTCGCCAGAGATTGAAAAATAAAGTTTATCAGC
TTGCTTTCTTTGTATGCTGCAGGGTATGGACATGGCTATTGCAAAGTTAA
ATAGTGGTGGGTGGGTCCACATCT
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