FC878402

Overview
NameFC878402
Unique NameFC878402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length891
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 458.373 bits (1178), Expect = 2.519e-128
Identity = 212/244 (86.89%), Postives = 229/244 (93.85%), Query Frame = 2
Query:  158 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            +V V+QDG+G Y +VQ+AID VPL NTCRT+IR+SPG+YRQPVYVPK KN IT AG  PE TVLTWNNTA+KIEHHQA+RVIGTGTFGCGSVIVEGEDF+AENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH+GKQYLKDCYIEGSVDFIFGNSTAL+EHCHIHCKSQGFITAQSRKSSQE+TGYVFLRCVITGNG +GYMYLGRPWGPFGRVV A+TYMD CIR+V WHNW
Sbjct:    6 MVRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPEITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSSQESTGYVFLRCVITGNGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNW 249          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.782e-57
Identity = 115/242 (47.52%), Postives = 150/242 (61.98%), Query Frame = 2
Query:  185 GHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEG-----SGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ--GFITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            G +  +Q+AID +PL N  R +I++  GVY++ V +P  K  IT+ G   E T + W +TA   +    ++    GT+   S  V    FVA+NITF N+ P         QAVA+RV+AD  AF+ CR LG QDTLY H G+ Y KDCYIEGSVDFIFGN+ +L E CH+H  +   G +TAQ R S  E TG+ F++C +T   GTG +YLGR WGPF RVVFA+TYMD  I    W+NW
Sbjct:   94 GDFTKIQDAIDSLPLINFVRVVIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPD----SKGNPMGTYNSASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTGFSFVKCKVT---GTGVLYLGRAWGPFSRVVFAYTYMDNIILPRGWYNW 328          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.198e-45
Identity = 105/256 (41.02%), Postives = 143/256 (55.86%), Query Frame = 2
Query:  167 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAP-----EGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKS----------QGFITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            V ++G  ++ TVQ A+D V   +  R +I I+ G+Y + V +PKTK  ITL G+  + T + WN+TA              GTF C +V V G  FVA+NI+F N AP     +   QAVAIR+  D  AF  C F G QDTL+   G+ Y KDCYI+GS+DFIFGN+ +L + C I   +           G +TA  R S  E +G+ F+ C I   GGTG+++LGR W P+ RVVF  T M   I    W+N+
Sbjct:   93 VDKNGCCNFTTVQSAVDAVGNFSQRRNVIWINSGMYYEKVVIPKTKPNITLQGQGFDITAIAWNDTAYS----------ANGTFYCATVQVFGSQFVAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTI---GGTGHVWLGRAWRPYSRVVFVSTTMTDVIAPEGWNNF 335          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.668e-45
Identity = 98/251 (39.04%), Postives = 141/251 (56.18%), Query Frame = 2
Query:  158 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEG-----SGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ--GFITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            V+TV+ +G   +R+VQ+A+D +P  N     I+I+PG YR+ V VP TK  IT  G   + T + W++ A+ +     A      T+   SV V    F A NI+F N+AP         QAVA R++ D+  F  C F G QDTL    G+ Y K+CYIEGS+DFIFGN  ++ + C +H  +   G I A  R   +E TG+ F+ C +T   GTG +Y+GR  G + R+V+A+TY D  + H  W +W
Sbjct:   60 VITVSLNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYREKVVVPATKPYITFKGAGRDVTAIEWHDRASDL----GANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVT---GTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDW 303          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.950e-44
Identity = 100/247 (40.49%), Postives = 143/247 (57.89%), Query Frame = 2
Query:  158 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPE----GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGF--ITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXW 880
            ++TV Q G  +++T+ EAI  +P  N  R +I+++PGVY + V +   +  ITL G+    TVLT++ TA +            GT    ++IV  E F A ++T +N+AP       GQA+A+R+ AD+ AFY+CRF G+QDTL    G  + KDCYIEG+ DFIFG   +L  +  +H    G   ITAQ R+S+ E  GY F+ C +TG  GTG +YLGR W    +VV+AFT M   +    W
Sbjct:   66 IITVNQKGGANFKTLNEAIKSIPTGNKNRVIIKLAPGVYNEKVTIDIARPFITLLGQPGAETVLTYHGTAAQY-----------GTVESATLIVWAEYFQAAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHAVGDGLRVITAQGRQSATEQNGYTFVHCKVTGT-GTG-IYLGRSWMSHPKVVYAFTEMTSVVNPSGW 299          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.853e-44
Identity = 102/258 (39.53%), Postives = 146/258 (56.59%), Query Frame = 2
Query:  152 SCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPE-----GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ-------GFITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            S V+TV   G G++  VQ AID VP  ++ +TLI ++ G YR+ V V + K  + + GR  +NT + WN+TA    +          T    S +V   +F A NI+F+N+APE        QAVA+R+  D+ AFY C F G QDTL    G+ + K+C+I+GS+DFIFGN  +L + C I+  ++       G ITAQ R+S  E +G+ F+ C I    G+G + LGR WG +  VVF+ TYM   I    W+NW
Sbjct:   88 SLVLTVDLHGCGNFSNVQSAIDVVPDLSSSKTLIIVNSGSYREKVTVNENKTNLVIQGRGYQNTSIEWNDTAKSAGN----------TADSFSFVVFAANFTAYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKI---DGSGEILLGRAWGAYATVVFSNTYMSGIITPEGWNNW 332          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.853e-44
Identity = 107/291 (36.77%), Postives = 158/291 (54.30%), Query Frame = 2
Query:   41 YTFLFKFIFGCVISQQSIPSPPARCGCVSFFLVLKMASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGS-----GQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ----GFITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHN 886
            +  LF  I   + S       P++C  +S F   K  + V+ V+ +G G ++ VQ+AID     +  +TLI I  G+YR+   V + KN + + G     T + WNNT               GTF   SV V GE F A NI+F+N+AP  +      QAVA++V  D+ AFY C F G QDTL    G+ + K C+IEGS+DFIFGN  +L E C +H  ++    G ITA  + + ++ TG+VF+ C IT   G+  ++LGR W P+ RV+F+ TYM + +    W++
Sbjct:    3 FFILFLSIISPIESVDQRIHHPSKCDHLSKFPT-KGFTMVLKVSLNGCGRFKRVQDAIDASIGSSQSKTLILIDFGIYRERFIVHENKNNLVVQGMGYSRTSIEWNNTTAS----------SNGTFSSFSVAVFGEKFTAYNISFKNTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHSIAKENTIGCITANGKDTLKDRTGFVFVNCKIT---GSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWND 279          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.853e-44
Identity = 96/248 (38.71%), Postives = 139/248 (56.05%), Query Frame = 2
Query:  158 VVTVAQDGTGHYRTVQEAIDRVP--LCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKS--QGFITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            ++ V Q G G +  +QEAI+ +P  L N+    I + PG+YR+ V +P  K  ITL+G    NT L W++              G       ++ +   DFV   +T +N     +G+AVA+RV AD+ AFY C    +QDTL    G  Y K+CYIEG+ DFI G++++L E CH+H  S   G ITAQ R S+ E +G+ FL C +TG+G T   +LGRPWG + RVVFA+++    +    W+ W
Sbjct:   50 LIRVDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITLSGTQASNTFLIWSD--------------GEDILESPTLTIFASDFVCRFLTIQNKFGT-AGRAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGSITAQMRTSATEKSGFTFLGCKLTGSGST---FLGRPWGAYSRVVFAYSFFSNVVAPQGWNQW 279          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.262e-43
Identity = 103/252 (40.87%), Postives = 142/252 (56.35%), Query Frame = 2
Query:  158 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGR--CPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENS----APEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIH--CKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            V+ V ++G G   TVQ A+D VP  N+ R  I I PG+YR+ V VPK+K  I+  G      +TV++W++ A+ +           GT+   SV +E + F A  ITFEN+    A E   QAVA+R+  D+  FY  R LG QDTL+   G  Y   CYI+G+VDFIFGN+ +L + C IH   K  G I A  R S  E TG+ F+ C I+   GTG +YLGR WG + R V++  ++   I  V W +W
Sbjct:   81 VIVVDKNGGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKVIVPKSKPYISFIGNESYAGDTVISWSDKASDLGCDGKE----LGTYRTASVSIESDFFCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIHSTAKRYGAIAAHHRDSETEDTGFSFVNCDIS---GTGQIYLGRAWGNYSRTVYSNCFIADIITPVGWSDW 325          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 8.034e-42
Identity = 97/245 (39.59%), Postives = 143/245 (58.37%), Query Frame = 2
Query:  167 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSG-----QAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGF--ITAQSRKSSQETTGYVFLRCVITGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXW 880
            V Q+G GH++T+ EAI+ V   NT R +I+I PGVY++ V + ++K  ITL G      VLT++ TA +            GT    ++IV  + F+A NI  +NSAP   G     QA+++R++ ++ AFYNC+F G+QDT+    G  + KDCYIEG+ DFIFG+  +L     ++    G   ITA + KS+ E +GY F+ C +TG  GTG +YLGR W    +VV+A+T M   +    W
Sbjct:   45 VKQNGRGHFKTITEAINSVRAGNTRRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTFDGTAAQY-----------GTVDSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGIRVITAHAGKSAAEKSGYSFVHCKVTGT-GTG-IYLGRSWMSHPKVVYAYTDMSSVVNPSGW 276          
The following BLAST results are available for this feature:
BLAST of FC878402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PME31_ARATH2.519e-12886.89Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME53_ARATH1.782e-5747.52Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME8_ARATH1.198e-4541.02Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME68_ARATH2.668e-4539.04Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME50_ARATH2.950e-4440.49Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME15_ARATH3.853e-4439.53Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME14_ARATH3.853e-4436.77Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME11_ARATH3.853e-4438.71Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME62_ARATH3.262e-4340.87Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME63_ARATH8.034e-4239.59Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878402 ID=FC878402; Name=FC878402; organism=Citrus clementina; type=EST; length=891bp
AGATTCTCTCTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTT
TGTTTAAATTTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCG
CCGCCTGCGCGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGC
ATCATGTGTGGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGG
TGCAGGAGGCAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTG
ATTCGTATATCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGAC
TAAGAACCTCATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCA
CTTGGAATAACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTA
ATTGGGACTGGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGA
TTTCGTTGCTGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCG
GCCAAGCTGTGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAAC
TGCAGGTTTCTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACA
GTATCTGAAAGATTGCTATATTGAAGGAAGTGTGGATTTTATATTTGGGA
ATAGTACTGCTCTCATAGAGCATTGTCATATCCACTGCAAGTCGCAAGGT
TTTATTACTGCACAAAGCAGGAAATCCTCTCAGGAGACAACTGGTTATGT
GTTTTTGAGATGTGTGATCACTGGGAATGGAGGGACAGGATATATGTATC
TTGGACGCCCATGGGGACCTTTCGGAAGGGTGGTCTTTGCATTTACATAT
ATGGATCAATGTATCAGACATGTANGCTGGCATAACTGGGG
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