FC878403

Overview
NameFC878403
Unique NameFC878403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8446 contig Ccv1_Contig8446:48..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 5.582e-51
Identity = 116/239 (48.54%), Postives = 144/239 (60.25%), Query Frame = 1
Query:  130 DHGVVNFLFLFLYLHA----LPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKRPPRSRSIGW 831
            DHG +  L LFL L +      +V  Q      D  S    +F+ TMAI+ ++LVSVFF LGFFSVYIR+C ER            G     +R+ ARGLD S+I TFPTF YS V+ L+IGK +LEC+VCLNEF D+ETLRLIPKC HVFH  CIDAWL +H TCP+CRA+L+P PGE+  S  IP L  D   S  +   D I+ + S D +  +  A   +  NQ  P RS S GW
Sbjct:   18 DHGSILQLLLFLLLLSSHGGFKFVAGQATHGGSDV-SGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGS--DPNGDRIRSLGSPDARLIESVA---LTCNQSMPRRSMSTGW 250          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.511e-43
Identity = 100/210 (47.62%), Postives = 129/210 (61.43%), Query Frame = 1
Query:  244 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQE--ISSTDVQRRDEEAPDVILTNQKRPPRSRSIGWRRPSGWFPVHTP 867
            F+ T AI+ ++LVSVFF LG  SVY+R+C +      D+       +N R      GLD SVI TFPTF YS V+ L+IGK +LEC VCLNEF D+ETLRLIP+C HVFH  CIDAWL +  TCP+CRANLVP PGE+ SS IP L  + G + L    D+ ++  ++S D +  D  A      NQ  P +S S GW+    + P  +P
Sbjct:   35 FSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGM-DSGGGPGNWLNVRQTTEP-GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLRTPIDDNRKRVLTSPDERLIDSVA---WTGNQSMPRKSMSTGWKLAELYSPASSP 239          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.839e-41
Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = 1
Query:  241 KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPS 663
            + +  MA++ VIL++  F +GFFS+Y R C+      PDA  +  GG   R+     ARGLD SV+ TFPTFLYS V+  K+GKG LECA+CLNEF D+ETLRL+PKC HVFH  CIDAWL AH TCPVCRANL  Q  E  S
Sbjct:   44 RLSPAMAVIVVILIAALFFMGFFSIYFRHCS----GVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGES 182          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.419e-38
Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 1
Query:  217 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRG--ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 654
            D ++ +G   +  MA+V V++++  F +GFF+VYIR CT     + D   T  GG  +R      ARGLD   I TFPTF+YS V+  KIGKG+LECA+CLNEF D+ETLRL+PKC HVFH  CI AWL  H TCPVCR NL  Q  E
Sbjct:   33 DPYAYSG-SLSPAMAVVVVVVIAALFFMGFFTVYIRHCT----GAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPE 175          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.991e-37
Identity = 91/214 (42.52%), Postives = 118/214 (55.14%), Query Frame = 1
Query:  262 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA--TIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVIL---------TNQKRPPRSRSIG---WRRPSGWFP 855
            +  VI+  + F L F  +    C +    SP   +  T  GG  + +  RR +RGL   VIN+FP+FLYS V+ LKIGKG +ECA+CLNEF DEETLRL+P CSH FH  CID WLS+ +TCPVCRA+L P+PG   +S  P + P           +   ++ +   +R   E+PDV L         T    PPRSRS G   WR     FP
Sbjct:   45 VPAVIIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPH---------DNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTPPRSRSTGLSNWRITELLFP 249          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 97/243 (39.92%), Postives = 127/243 (52.26%), Query Frame = 1
Query:  148 FLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQ--RSRR-GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKRPPRSRSIG---WRRPSGWFP 855
            FL L L L ++PY   QT          T  K N  + +V  +L  V F + F S++ R+   +   S    +T     +Q  R RR  ARGLD   I TFPTFLYS V+ ++IGKG +ECAVCL EF D+ETLRL+P C HVFH DC+D WLS H+TCP+CRA+LV  Q G+   S       D G+       +    + S+D    D     V  +N    PRS+S G   W+     FP
Sbjct:   18 FLLLLLLLQSVPYGFGQTQTTPP---GTTKTKPNDPVVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDA----VTWSNSNITPRSKSTGLSSWQITGILFP 253          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 1
Query:  136 GVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR--SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQ 714
            GV+  LFLF   H LPYVT Q      ++   T    +   +I+ ++++++F  LG  S  +     R           IG   Q     R  RGL+  VI +FPTFLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCPVCRANL  +PGE+     P LN DV +  +++
Sbjct:   15 GVILPLFLF---HLLPYVTCQQESVPTNSIRQTNLSAD---SIIAIVVLAIFISLGMVSCCLHCIFYREE---------IGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGES----YPYLNMDVETGGVQK 190          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.293e-31
Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 1
Query:  265 VTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGI--NQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP---QPGE 654
            V  +LV++FF+ G  SVYIR C    R++PD+          +  SRRG  GLD++V+ +FP F YS+V+E KIG   LECA+CLNE  D ET+RL+P C+H+FH+DCID WL +H TCPVCR+NL     +PG+
Sbjct:   48 VFAVLVTLFFLTGLLSVYIRHCA---RSNPDSSTRYFRNRANDGSSRRG--GLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGD 177          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.761e-31
Identity = 79/191 (41.36%), Postives = 108/191 (56.54%), Query Frame = 1
Query:  253 TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR-SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKRPPRSRS 822
            T+ ++T+IL ++F I+G  SV  R  + +  +           +  R S    RGLD+++IN+FPTFLYS V+E +IG G +ECAVC+ EF D ETLRL+P+C HVFH DC+  WLS H+TCP+CR +L  QPGE        LNP+               + ST+    D     V  TN+ RP RS S
Sbjct:   14 TLLVITIILFAIF-IVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGER-----SYLNPEP------------DLVESTNSHLFD----GVTWTNRNRPSRSWS 182          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.416e-31
Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  157 LFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGR---NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGS 720
            LFL +H LPYVT Q      D    T      T  ++ +I++++F  L   + ++ +   R      S + F +          R  RGL+  ++ +FP FLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCP CRANL  +PGE  S   P+ + + G+ + ++ S
Sbjct:   20 LFL-VHLLPYVTCQQESESVDRNRKTNFP---TETVIAIIVLAIFISLSMVACFLHKTFYRAEVEAASQEVFHS----------RARRGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGE--SYPYPITDLETGNEQRDEHS 194          
The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL1N_ARATH5.582e-5148.54RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL1C_ARATH2.511e-4347.62RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL3B_ARATH6.839e-4156.64RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL5H_ARATH5.419e-3852.70RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL1H_ARATH5.991e-3742.52RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]
ATL2G_ARATH8.652e-3639.92RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL4C_ARATH2.783e-3443.08Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL4O_ARATH1.293e-3150.37RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
ATL2F_ARATH3.761e-3141.36RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]
ATL4B_ARATH6.416e-3139.27Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bp
ACAAATTTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACTAT
AACTACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGA
GCCGTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTT
CTTTTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAAC
TCCACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACG
GTACTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTG
GGCTTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAG
CCCTGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCA
GAGGGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTC
CTCTACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATG
CGCGGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATAC
CAAAGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCT
GCTCATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGG
CGAAACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGA
GTCGATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGAT
GTGCAAAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAATCAGAA
AAGGCCACCTAGATCGAGATCGATAGGGTGGAGGAGGCCGTCCGGTTGGT
TTCCAGTTCACACTCCCCCGGTCACTCAGTGGTCCCACCCGGG
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