FC878408

Overview
NameFC878408
Unique NameFC878408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11471 contig Ccv1_Contig11471:140..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878408 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 7.169e-88
Identity = 167/265 (63.02%), Postives = 204/265 (76.98%), Query Frame = 2
Query:   83 MGQTPSTAIDPSDR---FNILSPAIVYN-DGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKRLRGIHDGADPIQ-PGAAAALSLKSICLKELVNGQSFEPLVXXXXXXXXXXXXRCLGDWDKVLEIIGNEKN 862
            MGQ PS+  + + R     + SP IV   + +   + +D  RDFTGDLPD+CLA++FQFLG+GDRKRCSLVCKRWL VDG SR+RLSL+A+ EI S L S+F+RFDSVTKLALRCDRKS+SL D+AL +IS+RC  LTR+KLRGCREITD GM  FA+NCK LKKLS GSC FGAK +N++L+HCKLLEELS+KRLRGIH+ A+ I  P  A++ SL+SICLKELVNGQ FEPL+            RCLGDWDKVL++I N K+
Sbjct:    1 MGQAPSSTAESNGRELDLRLWSPVIVAGGESMAVGNVVD--RDFTGDLPDECLAHVFQFLGAGDRKRCSLVCKRWLLVDGQSRHRLSLDAKDEISSFLTSMFNRFDSVTKLALRCDRKSVSLSDEALAMISVRCLNLTRVKLRGCREITDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAELIHLPDDASSSSLRSICLKELVNGQVFEPLLATTRTLKTLKIIRCLGDWDKVLQMIANGKS 263          
BLAST of FC878408 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.226e-79
Identity = 154/260 (59.23%), Postives = 195/260 (75.00%), Query Frame = 2
Query:   83 MGQTPSTAIDPSDRFNIL---SPAIVYNDGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKRLRGIHDGADPIQPGAAAALSLKSICLKELVNGQSFEPLVXXXXXXXXXXXXRCLGDWDKVLEIIGN 853
            MGQ PS+  +P+ R   L   SP  +  + + F D      DFT +LPDDCLA+IFQFL +GDRKRCSLV KRWL VDG +R+RLSL+A+SEIL  LP +F+RFDSVTKLALRCDR+S SL D+AL ++S+RC  L R+KLRGCREITD GM +FA+NCK+L+KLSCGSC FGAK IN++L+HCK+LEELS+KR+RG+H+ A+PI+   +A  SL+S+ LKELVNGQ F  LV            RCLG+WD+V E+ GN
Sbjct:    1 MGQAPSSPAEPNVRDTSLCLWSPEFLDCESIGFEDG---DYDFTANLPDDCLAHIFQFLSAGDRKRCSLVSKRWLLVDGQNRHRLSLDAKSEILPFLPCIFNRFDSVTKLALRCDRRSFSLSDEALFIVSIRCSNLIRVKLRGCREITDLGMESFARNCKSLRKLSCGSCTFGAKGINAMLEHCKVLEELSLKRIRGLHELAEPIKLSLSA--SLRSVFLKELVNGQVFGSLV-ATRTLKKVKIIRCLGNWDRVFEMNGN 254          
BLAST of FC878408 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.892e-74
Identity = 136/216 (62.96%), Postives = 170/216 (78.70%), Query Frame = 2
Query:  197 DFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKRLRGIHDGA-DPIQPGAAAALSLKSICLKELVNGQSFEPLVXXXXXXXXXXXXRCLGDWDKVLE 841
            D+T  LPD+CLA +FQFL SG+RKRC+LVC+RW+ V+G +RYRLSL+A+S++++S+PS+FSRFDSVTKL+L+CDR+S+S+ D+ALV ISLRC+ L RLKLR CRE+TD GM AFA+NCK LK  SCGSC FGAK + +VLDHC  LEELSIKRLRG  D A + I PG AA+ SLKSICLKEL NGQ F P++            RC GDWD +L+
Sbjct:   38 DYTSSLPDECLALVFQFLNSGNRKRCALVCRRWMIVEGQNRYRLSLHARSDLITSIPSLFSRFDSVTKLSLKCDRRSVSIGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFGAKGVKAVLDHCSNLEELSIKRLRGFTDIAPEMIGPGVAAS-SLKSICLKELYNGQCFGPVIVGAKNLKSLKLFRCSGDWDLLLQ 252          
BLAST of FC878408 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.131e-67
Identity = 126/226 (55.75%), Postives = 166/226 (73.45%), Query Frame = 2
Query:  185 DKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKRLRGIHDGADPIQPGAAAALSLKSICLKELVNGQSFEPLVXXXXXXXXXXXXRCLGDWDKVLEIIGNEKN 862
            D+  D+  +LPD+CL+ IFQ L   D KRCSLVC+RWL ++G  R+RLSL AQS+++S +PS+F+RFDSVTKL LR DR+S+ + D+A V+IS+RC+ LTRLKLRGC EI+D G++ F +NC++LKK+S GSC FG K +N++L+ C  LEELS+KRLRGI  GA+ I PG AA  SLK ICLKEL NGQ F PL+            RC GDWD+V E + ++ N
Sbjct:   68 DEPYDYISNLPDECLSLIFQSLTCADLKRCSLVCRRWLTIEGQCRHRLSLKAQSDLISVIPSLFTRFDSVTKLVLRSDRRSLGICDNAFVMISVRCRNLTRLKLRGCPEISDLGIIGFTENCRSLKKVSFGSCGFGVKGMNALLNTCLGLEELSVKRLRGIGAGAELIGPGGAAG-SLKVICLKELHNGQCFAPLLSGAKGLRILKIFRCSGDWDRVFEAVRDKVN 292          
The following BLAST results are available for this feature:
BLAST of FC878408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SKIP2_ARATH7.169e-8863.02F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FBL16_ARATH1.226e-7959.23F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
FB37_ARATH5.892e-7462.96F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
FBL8_ARATH3.131e-6755.75Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA49BF03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878408 ID=FC878408; Name=FC878408; organism=Citrus clementina; type=EST; length=871bp
AACTCTTTCTCCAAGCACCCAAAAAAGAACGCACTAAGAGAAGATCCCTC
TCGTTTTTGTTGTGTGTTTATTTTGTTCGCCGATGGGCCAAACACCTTCA
ACGGCGATAGACCCGAGCGATCGGTTTAATATCTTATCTCCGGCGATCGT
TTACAATGATGGTGTTGAGTTCTCCGACGAATTGGACAAGGCTCGGGATT
TCACCGGCGATTTACCGGACGATTGTTTGGCATATATTTTTCAATTCCTC
GGTTCTGGAGATCGGAAGCGATGTTCCCTTGTGTGCAAACGGTGGCTCCG
CGTGGACGGCGGGAGTCGCTATCGGCTATCTCTCAATGCTCAGAGCGAGA
TATTATCGTCTCTGCCTTCAGTTTTCTCGCGCTTCGACTCCGTCACGAAG
CTAGCTCTGCGATGCGACCGCAAATCGATTAGCTTAGACGACGACGCTTT
GGTTTTGATCTCTCTTCGTTGTCAGAAACTCACGCGCCTCAAGCTCCGTG
GTTGCCGCGAGATCACCGATCACGGTATGGTCGCATTTGCTCAAAATTGC
AAAACTCTGAAAAAACTTTCTTGCGGCTCGTGTATGTTTGGCGCCAAAGC
TATCAATTCGGTTCTTGATCACTGTAAGCTTCTCGAGGAGCTATCCATCA
AGCGGCTCAGAGGAATCCACGACGGAGCGGATCCGATCCAGCCTGGAGCC
GCTGCCGCTTTGTCTCTGAAGTCAATCTGCCTGAAGGAGCTGGTGAACGG
TCAGTCTTTTGAGCCTTTAGTAATCGCAGCTAAAAAGCTTAAAACTTTGA
AAATCATTCGCTGTCTAGGCGATTGGGATAAAGTATTAGAAATTATAGGA
AATGAAAAAAATGATACTTTG
back to top