FC878408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878408 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1) HSP 1 Score: 323.939 bits (829), Expect = 7.169e-88 Identity = 167/265 (63.02%), Postives = 204/265 (76.98%), Query Frame = 2 Query: 83 MGQTPSTAIDPSDR---FNILSPAIVYN-DGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKRLRGIHDGADPIQ-PGAAAALSLKSICLKELVNGQSFEPLVXXXXXXXXXXXXRCLGDWDKVLEIIGNEKN 862 MGQ PS+ + + R + SP IV + + + +D RDFTGDLPD+CLA++FQFLG+GDRKRCSLVCKRWL VDG SR+RLSL+A+ EI S L S+F+RFDSVTKLALRCDRKS+SL D+AL +IS+RC LTR+KLRGCREITD GM FA+NCK LKKLS GSC FGAK +N++L+HCKLLEELS+KRLRGIH+ A+ I P A++ SL+SICLKELVNGQ FEPL+ RCLGDWDKVL++I N K+ Sbjct: 1 MGQAPSSTAESNGRELDLRLWSPVIVAGGESMAVGNVVD--RDFTGDLPDECLAHVFQFLGAGDRKRCSLVCKRWLLVDGQSRHRLSLDAKDEISSFLTSMFNRFDSVTKLALRCDRKSVSLSDEALAMISVRCLNLTRVKLRGCREITDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAELIHLPDDASSSSLRSICLKELVNGQVFEPLLATTRTLKTLKIIRCLGDWDKVLQMIANGKS 263
BLAST of FC878408 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1) HSP 1 Score: 296.59 bits (758), Expect = 1.226e-79 Identity = 154/260 (59.23%), Postives = 195/260 (75.00%), Query Frame = 2 Query: 83 MGQTPSTAIDPSDRFNIL---SPAIVYNDGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKRLRGIHDGADPIQPGAAAALSLKSICLKELVNGQSFEPLVXXXXXXXXXXXXRCLGDWDKVLEIIGN 853 MGQ PS+ +P+ R L SP + + + F D DFT +LPDDCLA+IFQFL +GDRKRCSLV KRWL VDG +R+RLSL+A+SEIL LP +F+RFDSVTKLALRCDR+S SL D+AL ++S+RC L R+KLRGCREITD GM +FA+NCK+L+KLSCGSC FGAK IN++L+HCK+LEELS+KR+RG+H+ A+PI+ +A SL+S+ LKELVNGQ F LV RCLG+WD+V E+ GN Sbjct: 1 MGQAPSSPAEPNVRDTSLCLWSPEFLDCESIGFEDG---DYDFTANLPDDCLAHIFQFLSAGDRKRCSLVSKRWLLVDGQNRHRLSLDAKSEILPFLPCIFNRFDSVTKLALRCDRRSFSLSDEALFIVSIRCSNLIRVKLRGCREITDLGMESFARNCKSLRKLSCGSCTFGAKGINAMLEHCKVLEELSLKRIRGLHELAEPIKLSLSA--SLRSVFLKELVNGQVFGSLV-ATRTLKKVKIIRCLGNWDRVFEMNGN 254
BLAST of FC878408 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 5.892e-74 Identity = 136/216 (62.96%), Postives = 170/216 (78.70%), Query Frame = 2 Query: 197 DFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKRLRGIHDGA-DPIQPGAAAALSLKSICLKELVNGQSFEPLVXXXXXXXXXXXXRCLGDWDKVLE 841 D+T LPD+CLA +FQFL SG+RKRC+LVC+RW+ V+G +RYRLSL+A+S++++S+PS+FSRFDSVTKL+L+CDR+S+S+ D+ALV ISLRC+ L RLKLR CRE+TD GM AFA+NCK LK SCGSC FGAK + +VLDHC LEELSIKRLRG D A + I PG AA+ SLKSICLKEL NGQ F P++ RC GDWD +L+ Sbjct: 38 DYTSSLPDECLALVFQFLNSGNRKRCALVCRRWMIVEGQNRYRLSLHARSDLITSIPSLFSRFDSVTKLSLKCDRRSVSIGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFGAKGVKAVLDHCSNLEELSIKRLRGFTDIAPEMIGPGVAAS-SLKSICLKELYNGQCFGPVIVGAKNLKSLKLFRCSGDWDLLLQ 252
BLAST of FC878408 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 3.131e-67 Identity = 126/226 (55.75%), Postives = 166/226 (73.45%), Query Frame = 2 Query: 185 DKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKRLRGIHDGADPIQPGAAAALSLKSICLKELVNGQSFEPLVXXXXXXXXXXXXRCLGDWDKVLEIIGNEKN 862 D+ D+ +LPD+CL+ IFQ L D KRCSLVC+RWL ++G R+RLSL AQS+++S +PS+F+RFDSVTKL LR DR+S+ + D+A V+IS+RC+ LTRLKLRGC EI+D G++ F +NC++LKK+S GSC FG K +N++L+ C LEELS+KRLRGI GA+ I PG AA SLK ICLKEL NGQ F PL+ RC GDWD+V E + ++ N Sbjct: 68 DEPYDYISNLPDECLSLIFQSLTCADLKRCSLVCRRWLTIEGQCRHRLSLKAQSDLISVIPSLFTRFDSVTKLVLRSDRRSLGICDNAFVMISVRCRNLTRLKLRGCPEISDLGIIGFTENCRSLKKVSFGSCGFGVKGMNALLNTCLGLEELSVKRLRGIGAGAELIGPGGAAG-SLKVICLKELHNGQCFAPLLSGAKGLRILKIFRCSGDWDRVFEAVRDKVN 292 The following BLAST results are available for this feature:
BLAST of FC878408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878408 ID=FC878408; Name=FC878408; organism=Citrus clementina; type=EST; length=871bpback to top |