FC878416

Overview
NameFC878416
Unique NameFC878416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8299 contig Ccv1_Contig8299:76..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878416 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 242.276 bits (617), Expect = 2.980e-63
Identity = 137/303 (45.21%), Postives = 190/303 (62.71%), Query Frame = 3
Query:   15 SRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHXXXXXXXXXXXXXXXHGSKDEAVADKSDDIRRNYYVVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP-GRVWDLASSAVATPLAKENDELFASCXFSPLNNEDYVLYIAAITDRGASIVTWNTTL-GRDSHKQVVREPVSSF 917
            +   +  N+Q YGVP+Y A W+P +  +RS                   S+D+  +  S    R+  +VL        SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP   G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AAG+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSLG  GP  RVWD+ +SA    L+KE DE+FASC FS  +  + VLYIAA T+RG SI+T +T L  R   K + +  +S+F
Sbjct:    6 TETNQPSNMQTYGVPIYAADWIP-EVDVRSK-----------IIMDPEKSEDDDESSSSSSSSRSC-IVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLG--GPVCRVWDVNASAAVASLSKEKDEMFASCRFSVDSAGNEVLYIAANTERGGSIITCDTKLWKRKWSKPIKKNSISAF 291          
BLAST of FC878416 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.821e-21
Identity = 61/196 (31.12%), Postives = 97/196 (49.49%), Query Frame = 3
Query:  213 YVVLXXXXXXXNSGIRNAVLLSHFDF--ASNSLSDQPVAE--LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCXFS 785
            +V++        S + +  LL+ F F   + SLS  P+A   L+     P  +++HP GD  +C+  +  C+LFE            G+ I  K L  L+N G Q  + F  +G+  A G  +G LR+ +WP+L +IL+E +AH S++D+ FS D +FL +    G  R+W        + L +  DE    C FS
Sbjct:   27 WVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGAT------GITILAKELLPLQNAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLERSGDENIELCRFS 216          
The following BLAST results are available for this feature:
BLAST of FC878416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STLP2_ARATH2.980e-6345.21SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST... [more]
PHF1_ARATH2.821e-2131.12SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA15CB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878416 ID=FC878416; Name=FC878416; organism=Citrus clementina; type=EST; length=917bp
CAATGGGTAGCAGGAGCAGGAATGAAGAATCTCACAACTTGCAGAAATAC
GGCGTGCCGTTGTACGGTGCCGGTTGGGTTCCGTACGATCAAGTCATCAG
ATCCACGCACAAGCCACCTAAACAACAAGACGATGACGACAAAGAGGAAG
ACCAGCATGGATCCAAAGACGAAGCTGTCGCCGACAAATCCGACGATATT
CGCCGCAACTACTACGTTGTTTTGGCCGGCGGTGGTGGTGCGGGCAACAG
CGGCATCCGCAACGCCGTCCTTTTGTCTCACTTCGATTTCGCCTCCAATT
CCCTCTCCGATCAGCCGGTGGCTGAGCTTCGAACTGATTCTGATTTGCCT
TATCGAATGGCTATTCACCCGCACGGTGATGGCATTATTTGTGCACTGCA
AAATAGCTGCAGATTGTTTGAGTGGGATGAAGTGGAGAACACTGAAATCC
GTAGACTGGGTGTGAAAATTTCAGAGAAAGTGCTCAGCCAGTTAGAAAAT
GTTGGACAACAGTTAGCACTAACGTTCGACTCTGAGGGTACTATATTTGC
TGCTGGTAGTGAGAATGGCAATTTAAGGGTTTTCAAGTGGCCTAGCCTGG
AAATCATTCTGAATGAGTCTGAAGCCCATGCTTCTGTGAAGGATTTGTCT
TTCAGCCCTGATGGAAAATTCCTTGTCTCCTTGGGAAATCGTGGTCCTGG
TAGGGTTTGGGATCTAGCTTCTTCAGCCGTTGCAACTCCTCTAGCGAAGG
AAAATGATGAACTTTTTGCTTCTTGTANGTTCTCTCCACTAAATAATGAG
GATTATGTTCTATACATTGCTGCAATAACAGACAGAGGTGCAAGTATTGT
GACATGGAATACAACACTTGGAAGAGATTCGCACAAGCAAGTAGTCCGTG
AACCCGTTTCTTCCTTC
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