FC878418

Overview
NameFC878418
Unique NameFC878418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5258 contig Ccv1_Contig5258:1..896. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of FC878418 vs. ExPASy Swiss-Prot
Match: YLI2_SCHPO (Uncharacterized protein C458.02c OS=Schizosaccharomyces pombe GN=SPAC458.02c PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.785e-26
Identity = 75/252 (29.76%), Postives = 131/252 (51.98%), Query Frame = 2
Query:  134 AEKDLNSCNERMKAIKAKLDLAKPQNQDSPTTQRRTELINERNAIRQTQQTGKSSRGQIIDKIKRLDEQLKAAITEDKDRRSKLKFKSADDVQTEINRLRGQVDTGTMKLVEEKKALDDISSLNRLKKGFASFDQAQERISGLKAQIAELRKPLDNPDPETSAMSNRFTAINAELDTIKAEQDDVYKNLNAMRDERTKIHEQQQSAWTKVKELXDNHYSAKRAYGEYEKEAYRVRKEKQQAERKAYEQGKKK 889
            A+K  N   E++ AI+    L           ++  EL  E + IR  Q   +SS+  +I+K+K  DE LK  + E    +  + FKS  ++   + +L+  VD+GT+K+V+EKK L +IS  NR +K F   +  Q  I  ++ ++ ELR  L+  D E+  +S++F  I +ELD ++ +QD  YK+   +  ER          + + + L   + +  RA+  YE+E    R+E+ + ER+  E+ K++
Sbjct:   28 AKKRFNEHKEKLGAIRGGGSLQ----------EKNAELRAELDNIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELNELRDQLN--DSESKKLSDKFVEIRSELDEVRKQQDGYYKDQRKLIAERDDEKTALDDLYNQRRALQREYDTQLRAFRTYEREQRAKRQEQFRLERENREKEKRR 267          
BLAST of FC878418 vs. ExPASy Swiss-Prot
Match: BFR1_YEAST (Nuclear segregation protein BFR1 OS=Saccharomyces cerevisiae GN=BFR1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.923e-20
Identity = 66/259 (25.48%), Postives = 144/259 (55.60%), Query Frame = 2
Query:  125 LAAAEKDLNSCNERMKAIKAKLDLAKPQ---NQDSPTTQRRTELINERNA-IRQTQQTGKSSRGQIIDKIKRLDEQLKAAITEDKDRRSK-LKFKSADDVQTEINRLRGQVDTGTMKLVEEKKALDDISSLNRLKKGFASFDQAQERISGLKAQIAELRKPLDNPDPETSAMSNRFTAINAELDTIKAEQDDVYKNLNAMRDERTKIHEQQQSAWTKVKEL---XDNHYSAKRAYGEYEKEAYRVRKEKQQAERKAYEQ 877
            ++  +K L++ N ++K I  ++ L + Q   +Q + TTQ+  + + ++N  I + Q   K+ R  I D IK+LD Q+K    + +++  K  KF S  + +  IN +   + +G + LV+EK  + ++ SLN+L K   + +  ++ +   KA+I +L++ L+  +P+   +SN+F     +L+ I ++   VY     + ++R  +++++   +++++++    DN + + RA  + +KE  R+++E++Q   K  EQ
Sbjct:   13 VSVRDKKLDTLNVQLKKIDTEIGLIRKQIDQHQVNDTTQQERKKLQDKNKEIIKIQADLKTRRSNIHDSIKQLDAQIKRKNNQIEEKLGKKAKFSSTAEAKQRINEIEESIASGDLSLVQEKLLVKEMQSLNKLIKDLVNIEPIRKSVDADKAKINQLKEELNGLNPKD--VSNQFEENQQKLNDIHSKTQGVYDKRQTLFNKRAALYKKRDELYSQIRQIRADFDNEFKSFRA--KLDKE--RLKREEEQRLSKLLEQ 265          
The following BLAST results are available for this feature:
BLAST of FC878418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YLI2_SCHPO4.785e-2629.76Uncharacterized protein C458.02c OS=Schizosaccharo... [more]
BFR1_YEAST3.923e-2025.48Nuclear segregation protein BFR1 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA49BF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878418 ID=FC878418; Name=FC878418; organism=Citrus clementina; type=EST; length=896bp
TATGGCTACCCCTTCAGCGGTCGCAATGACCACAGCTGATGTCAAGGAGG
TCACCAATGGCGAGCATAAGCACGGAAAACCGGAGAAGCCGGAGAAGCCC
AACGAGGAGGTCTTCAAGAAAGAGCTGGCTGCTGCCGAAAAGGATCTAAA
TTCCTGCAACGAGCGCATGAAAGCGATCAAAGCCAAGCTGGATCTTGCAA
AACCTCAAAATCAGGACAGCCCGACCACGCAGCGCCGTACCGAGTTGATC
AACGAGCGTAATGCCATTCGCCAAACACAGCAGACCGGCAAGTCTTCTCG
AGGACAGATAATTGATAAGATCAAGCGTCTGGACGAGCAGCTCAAGGCGG
CCATCACCGAGGACAAAGACCGACGCTCGAAGCTCAAGTTCAAGTCTGCA
GATGACGTCCAGACAGAAATTAATAGACTGCGAGGACAGGTAGACACCGG
CACGATGAAGCTTGTGGAAGAGAAGAAGGCGTTGGACGATATAAGCAGTC
TCAACAGGCTGAAGAAAGGATTTGCGTCATTCGACCAGGCTCAAGAGAGG
ATATCGGGCCTCAAAGCACAAATCGCCGAACTCCGTAAGCCCCTTGACAA
TCCCGATCCAGAGACCTCAGCCATGAGCAATCGGTTCACTGCCATCAACG
CAGAACTCGACACCATCAAGGCTGAACAGGACGACGTCTACAAGAATCTC
AACGCTATGCGCGACGAGCGAACGAAAATTCACGAGCAGCAACAATCAGC
ATGGACTAAAGTCAAGGAGCTCANAGACAACCACTACTCCGCCAAGCGTG
CATACGGGGAGTATGAGAAGGAAGCATACCGTGTACGCAAAGAGAAACAG
CAGGCAGAGCGTAAGGCATACGAGCAAGGCAAGAAAAAGCAGTATG
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