FC878420
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G +SRGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_POPAL (50S ribosomal protein L16, chloroplastic OS=Populus alba GN=rpl16 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G +SRGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.799e-22 Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 3 Query: 681 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 +L+ PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 64
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_JASNU (50S ribosomal protein L16, chloroplastic OS=Jasminum nudiflorum GN=rpl16 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.349e-22 Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PK+ +F KQHRGRM G +SRGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKKTRFRKQHRGRMKGISSRGNYICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_HORVU (50S ribosomal protein L16, chloroplastic OS=Hordeum vulgare GN=rpl16 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.234e-22 Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 3 Query: 681 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 +L+ PKR +F KQHRGRM GK+ RGN ICFGRYALQALEPAWITARQIEAGRRA+ R +RGGK Sbjct: 1 MLSNPKRTRFRKQHRGRMKGKSFRGNRICFGRYALQALEPAWITARQIEAGRRAITRYARRGGK 64
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_VITVI (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera GN=rpl16 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_GOSBA (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CICAR (50S ribosomal protein L16, chloroplastic OS=Cicer arietinum GN=rpl16 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PK+ +F KQHRGRM GKA RGN ICFG+YALQALEPAWIT+RQIEAGRRAM RNV+RGG+ Sbjct: 1 MLSPKKTRFRKQHRGRMKGKACRGNKICFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGQ 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_OLIPU (50S ribosomal protein L16, chloroplastic OS=Olimarabidopsis pumila GN=rpl16 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22 Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_NASOF (50S ribosomal protein L16, chloroplastic OS=Nasturtium officinale GN=rpl16 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22 Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK Sbjct: 1 MLSPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63 The following BLAST results are available for this feature:
BLAST of FC878420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878420 ID=FC878420; Name=FC878420; organism=Citrus clementina; type=EST; length=873bpback to top |