FC878420

Overview
NameFC878420
Unique NameFC878420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G +SRGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_POPAL (50S ribosomal protein L16, chloroplastic OS=Populus alba GN=rpl16 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G +SRGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.799e-22
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  681 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +L+ PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 64          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_JASNU (50S ribosomal protein L16, chloroplastic OS=Jasminum nudiflorum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.349e-22
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PK+ +F KQHRGRM G +SRGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKKTRFRKQHRGRMKGISSRGNYICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_HORVU (50S ribosomal protein L16, chloroplastic OS=Hordeum vulgare GN=rpl16 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.234e-22
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  681 LLAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +L+ PKR +F KQHRGRM GK+ RGN ICFGRYALQALEPAWITARQIEAGRRA+ R  +RGGK
Sbjct:    1 MLSNPKRTRFRKQHRGRMKGKSFRGNRICFGRYALQALEPAWITARQIEAGRRAITRYARRGGK 64          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_VITVI (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_GOSBA (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CICAR (50S ribosomal protein L16, chloroplastic OS=Cicer arietinum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PK+ +F KQHRGRM GKA RGN ICFG+YALQALEPAWIT+RQIEAGRRAM RNV+RGG+
Sbjct:    1 MLSPKKTRFRKQHRGRMKGKACRGNKICFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGQ 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_OLIPU (50S ribosomal protein L16, chloroplastic OS=Olimarabidopsis pumila GN=rpl16 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_NASOF (50S ribosomal protein L16, chloroplastic OS=Nasturtium officinale GN=rpl16 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGK 63          
The following BLAST results are available for this feature:
BLAST of FC878420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_POPTR1.377e-2279.3750S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_POPAL1.377e-2279.3750S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_CITSI1.799e-2278.1350S ribosomal protein L16, chloroplastic OS=Citrus... [more]
RK16_JASNU2.349e-2277.7850S ribosomal protein L16, chloroplastic OS=Jasmin... [more]
RK16_HORVU5.234e-2276.5650S ribosomal protein L16, chloroplastic OS=Hordeu... [more]
RK16_VITVI6.835e-2277.7850S ribosomal protein L16, chloroplastic OS=Vitis ... [more]
RK16_GOSBA6.835e-2277.7850S ribosomal protein L16, chloroplastic OS=Gossyp... [more]
RK16_CICAR6.835e-2276.1950S ribosomal protein L16, chloroplastic OS=Cicer ... [more]
RK16_OLIPU8.927e-2276.1950S ribosomal protein L16, chloroplastic OS=Olimar... [more]
RK16_NASOF8.927e-2276.1950S ribosomal protein L16, chloroplastic OS=Nastur... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878420 ID=FC878420; Name=FC878420; organism=Citrus clementina; type=EST; length=873bp
AAAGATTTCAAGAAAAGTTTGATAGAAAGGGTTTGTTCAGGAAGAATCGA
AAAAGGGGTTTTTAAGATAACAAAGCAGTGCTAATAGCACCACCCCTGTT
CTTATCCCCCTCCATTGAAACCCTAAATTCCTCGTATCATATTTTCATGG
CAATCGCTTCAATTCTCAACTCAAATCGGCTGCTTCTGTCAAAGCGAATT
GTAAATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCT
TAGTTTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTC
AGGCTAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGC
AGCGAGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACA
ATCCGTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGA
ATCCGAATCCGAATCCGAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTC
TTTTTCGTTTCGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAAT
GACTAGTCTCCAACAGAAGGTTCTGGATCTTAGTCATTTACTAACGGAGA
CAACAAAATCATTATTCATCGGACACGACACTCAACGTTGGATCTCTGAT
TATTCACCCGTGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACG
AATAAAGTTTCCCAAACAACACAGAGGAAGAATGACGGGAAAAGCCAGTC
GAGGAAATCTTATTTGCTTCGGGAGGTATGCTCTTCAAGCGCTCGAACCC
GCCTGGATCACAGCCAGACAAATCGAAGCGGGGCGCCGAGCAATGGTACG
GAATGTCAAGCGCGGTGGAAAAA
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