FC878424

Overview
NameFC878424
Unique NameFC878424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: AVP_HORVU (Pyrophosphate-energized vacuolar membrane proton pump OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 6.316e-75
Identity = 150/254 (59.06%), Postives = 176/254 (69.29%), Query Frame = 3
Query:   48 MASWSEGHTQVLTPXXXXXXXXXXXXXWVLVSKVKISNGAGS------NGDDDRLIXXXXXXXGVDSLEAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            MA   E  T++L P             W +VSKVK++ GA S      NG  D LI       G++     +KCAEIQ AIS GATSFLF  Y+Y+ + M VF+ IIFLF GS++GFSTK +PCTY+ G  CKPAL  A+FST +FLLGA+TS +SGFLGMKI TYANARTTLEARKGV KAFITAFR+ AVMG           Y++IN+FK+YY DDWEGL+ESITGY L GSSMALFGRVGGGIYTKA DV
Sbjct:    1 MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAAAGAKNGYGDYLIEEEE---GLNDHNVVVKCAEIQTAISEGATSFLFTMYQYVGMFMVVFAAIIFLFLGSIEGFSTKGQPCTYSKGT-CKPALYTALFSTASFLLGAITSLVSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLSSSGLVVLYITINVFKMYYGDDWEGLFESITGYGLGGSSMALFGRVGGGIYTKAADV 250          

HSP 2 Score: 25.0238 bits (53), Expect = 6.316e-75
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVERNI
Sbjct:  252 ADLVGKVERNI 262          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: AVP_PHAAU (Pyrophosphate-energized vacuolar membrane proton pump OS=Phaseolus aureus PE=1 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 8.993e-74
Identity = 144/247 (58.30%), Postives = 171/247 (69.23%), Query Frame = 3
Query:   72 TQVLTPXXXXXXXXXXXXXWVLVSKVKIS-------NGAGSNGDDDRLIXXXXXXXGVDSLEAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            T++L P             W+LVSKVK+S       N A  NG +D LI       G++     +KCAEIQNAIS GATSFLF +YKY+ + M  F+ +IFLF GSV+GFST  + C+Y+    CKPAL  AIFST++FLLG +TS +SGFLGMKI TYANARTTLEARKGV KAFITAFR+ AVMG           Y++INLFK+YY DDW GL+E+ITGY L GSSMALFGRVGGGIYTKA DV
Sbjct:   11 TEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEEE---GINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADV 254          

HSP 2 Score: 25.0238 bits (53), Expect = 8.993e-74
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVERNI
Sbjct:  256 ADLVGKVERNI 266          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: AVP1_ARATH (Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 4.425e-73
Identity = 147/250 (58.80%), Postives = 171/250 (68.40%), Query Frame = 3
Query:   72 TQVLTPXXXXXXXXXXXXXWVLVSKVKI--------SNGA--GSNGDDDRLIXXXXXXXGVDSLEAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            T++L P             W +VS+VK+        S GA  G NG  D LI       GV+      KCAEIQ AIS GATSFLF +YKY+ V M  F+ +IF+F GSV+GFST ++PCTY+T   CKPAL  A FSTIAF+LGA+TS LSGFLGMKI TYANARTTLEARKGV KAFI AFR+ AVMG           Y++IN+FK+YY DDWEGL+E+ITGY L GSSMALFGRVGGGIYTKA DV
Sbjct:   12 TEILVPICAVIGIAFSLFQWYVVSRVKLTSDLGASSSGGANNGKNGYGDYLIEEEE---GVNDQSVVAKCAEIQTAISEGATSFLFTEYKYVGVFMIFFAAVIFVFLGSVEGFSTDNKPCTYDTTRTCKPALATAAFSTIAFVLGAVTSVLSGFLGMKIATYANARTTLEARKGVGKAFIVAFRSGAVMGFLLAASGLLVLYITINVFKIYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADV 258          

HSP 2 Score: 24.6386 bits (52), Expect = 4.425e-73
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGK+ERNI
Sbjct:  260 ADLVGKIERNI 270          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_LEPIN (Pyrophosphate-energized proton pump OS=Leptospira interrogans GN=hppA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.536e-24
Identity = 72/185 (38.92%), Postives = 100/185 (54.05%), Query Frame = 3
Query:  246 KCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSV--KGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFK-LYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            K  EI +AIS GA +FL  +YK +S+ +   + +I L   +   +GF+                   + I++ IAF+ GAL S +SGF+GMKI T  N RT   A+  ++KAF  AF + AVMG            V   +F  +Y   +   L ES+ G+ L GS++ALFGRVGGGIYTKA DV
Sbjct:   42 KLLEISSAISEGAMAFLVREYKVISLFIAFMAVLIVLLLDNPGSEGFN-------------------DGIYTAIAFVSGALISCISGFIGMKIATAGNVRTAEAAKSSMAKAFRVAFDSGAVMGFGLVGLAILGMIVLFLVFTGMYPGVEKHFLMESLAGFGLGGSAVALFGRVGGGIYTKAADV 207          

HSP 2 Score: 21.557 bits (44), Expect = 9.536e-24
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE+ I
Sbjct:  209 ADLVGKVEKGI 219          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_LEPIC (Pyrophosphate-energized proton pump OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=hppA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.536e-24
Identity = 72/185 (38.92%), Postives = 100/185 (54.05%), Query Frame = 3
Query:  246 KCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSV--KGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFK-LYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            K  EI +AIS GA +FL  +YK +S+ +   + +I L   +   +GF+                   + I++ IAF+ GAL S +SGF+GMKI T  N RT   A+  ++KAF  AF + AVMG            V   +F  +Y   +   L ES+ G+ L GS++ALFGRVGGGIYTKA DV
Sbjct:   42 KLLEISSAISEGAMAFLVREYKVISLFIAFMAVLIVLLLDNPGSEGFN-------------------DGIYTAIAFVSGALISCISGFIGMKIATAGNVRTAEAAKSSMAKAFRVAFDSGAVMGFGLVGLAILGMIVLFLVFTGMYPGVEKHFLMESLAGFGLGGSAVALFGRVGGGIYTKAADV 207          

HSP 2 Score: 21.557 bits (44), Expect = 9.536e-24
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE+ I
Sbjct:  209 ADLVGKVEKGI 219          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_CLOTE (Pyrophosphate-energized proton pump OS=Clostridium tetani GN=hppA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16
Identity = 63/180 (35.00%), Postives = 84/180 (46.67%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIA-FLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI   I  GA +FL  +YKYL+  + + + I+ +F G                            + T A F+LGA+ S  +G+ GM + T AN RT   AR    KA   AF   AVMG              + +  +YY   + G  E +TG+ L  SS+ALF RVGGGIYTKA DV
Sbjct:   38 EIAGHIHDGAMAFLKTEYKYLTGFIVIVTVILAIFVG----------------------------WQTAACFILGAIFSIFAGYFGMNVATKANVRTAEAARHSQGKALNIAFSGGAVMGMSVVGLGV------VGIGIMYYI--FGGNMEFVTGFGLGASSIALFARVGGGIYTKAADV 181          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA1_METMA (Pyrophosphate-energized proton pump 1 OS=Methanosarcina mazei GN=hppA1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.722e-15
Identity = 58/180 (32.22%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVS-INLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            +I  AI  GA  +L  QY+ ++V +   + ++ L                          L N + +   F+ GA+ S  +G+ GM   T AN RTT  A +G+  AF  +F +  VMG            +S I L  +Y D D   L   I G+    SS+ALF RVGGGI+TKA DV
Sbjct:   38 KITAAIHGGAMVYLNRQYRAIAVFVVFIAIVLAL-------------------------VLPNGVLTAACFVFGAVLSATAGYAGMLTATIANGRTTNAATRGIGPAFKVSFASGTVMGMSVVGLGLFGLSLSFIILGNIYTDMDLFTLLNIIAGFSFGASSIALFARVGGGIFTKAADV 192          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_FUSNN (Pyrophosphate-energized proton pump OS=Fusobacterium nucleatum subsp. nucleatum GN=hppA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.272e-14
Identity = 64/187 (34.22%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  246 KCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKG-VSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKL---YYDDDWEGL-YESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            K  EI  AI  GA +FL  +YK L V + V +  + +F                            ++ +  AF+LGA+TS ++G  GM+I T AN RT + A++G ++KA   AF   AVMG            V + +F L          G+    +TG+ +  SS+ALF RVGGGIYTKA DV
Sbjct:   38 KVEEITAAIREGAMAFLAAEYKILIVFVIVVAVALGIFI---------------------------SVPTAGAFILGAITSAIAGNAGMRIATKANGRTAIAAKEGGLAKALNVAFSGGAVMGLTV---------VGLGMFMLSLILLVSRTVGISVNDVTGFGMGASSIALFARVGGGIYTKAADV 188          

HSP 2 Score: 20.4014 bits (41), Expect = 1.272e-14
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE  I
Sbjct:  190 ADLVGKVEAGI 200          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA1_METAC (Pyrophosphate-energized proton pump 1 OS=Methanosarcina acetivorans GN=hppA1 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.146e-14
Identity = 58/180 (32.22%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVS-INLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            +I  +I  GA  +L  QY+ ++V +   + II L                          L N   +   F+ GA+ S  +G+ GM   T AN RTT  A +G+  AF  +F +  VMG            +S I L  +Y D D   +   + G+ L  SS+ALF RVGGGI+TKA DV
Sbjct:   38 KITASIHGGAMVYLNRQYRAIAVFVVFLAIIIALI-------------------------LPNGALTAACFVFGAVLSATAGYAGMLTATIANGRTTNAATRGIGPAFRVSFASGTVMGMSVVGLGLFGLSLSFIILESVYTDLDLLTIVNIVAGFSLGASSIALFARVGGGIFTKAADV 192          

HSP 2 Score: 20.4014 bits (41), Expect = 2.146e-14
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE  I
Sbjct:  194 ADLVGKVEAGI 204          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA2_METAC (Pyrophosphate-energized proton pump 2 OS=Methanosarcina acetivorans GN=hppA2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.789e-14
Identity = 58/180 (32.22%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFS-TIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI  AI  GA ++L  QYK ++VV  + S  I+FL    +K                            I FL GA++S  +G++GM ++  AN RT   A  G+ KA   AFR  AV G            +  + F + Y D      + + G+    S ++LF RVGGGI+TKA DV
Sbjct:   38 EIAGAIQEGAMAYLNRQYKTIAVVSIILSFLILFLLDDGLK--------------------------IAIGFLAGAISSAAAGYIGMSVSVRANIRTAHAASSGLEKAMSVAFRGGAVTG----LAVVGLALLGTSSFYILYGD-----VDLVVGFGFGASLISLFARVGGGIFTKAADV 182          

HSP 2 Score: 20.4014 bits (41), Expect = 2.789e-14
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE  I
Sbjct:  184 ADLVGKVEAGI 194          
The following BLAST results are available for this feature:
BLAST of FC878424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
AVP_HORVU6.316e-7559.06Pyrophosphate-energized vacuolar membrane proton p... [more]
AVP_PHAAU8.993e-7458.30Pyrophosphate-energized vacuolar membrane proton p... [more]
AVP1_ARATH4.425e-7358.80Pyrophosphate-energized vacuolar membrane proton p... [more]
HPPA_LEPIN9.536e-2438.92Pyrophosphate-energized proton pump OS=Leptospira ... [more]
HPPA_LEPIC9.536e-2438.92Pyrophosphate-energized proton pump OS=Leptospira ... [more]
HPPA_CLOTE8.828e-1635.00Pyrophosphate-energized proton pump OS=Clostridium... [more]
HPPA1_METMA5.722e-1532.22Pyrophosphate-energized proton pump 1 OS=Methanosa... [more]
HPPA_FUSNN1.272e-1434.22Pyrophosphate-energized proton pump OS=Fusobacteri... [more]
HPPA1_METAC2.146e-1432.22Pyrophosphate-energized proton pump 1 OS=Methanosa... [more]
HPPA2_METAC2.789e-1432.22Pyrophosphate-energized proton pump 2 OS=Methanosa... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878424 ID=FC878424; Name=FC878424; organism=Citrus clementina; type=EST; length=829bp
ATTTTCAAGAAACAAAGTGATCATCAATAGTGAGTTCATTTATGGAAATG
GCTTCATGGAGTGAGGGGCATACACAAGTTCTGACACCCGCAGCTGCTTT
TATAGGAATTGGTTTTGCTTTGATTCTGTGGGTATTGGTCTCAAAGGTTA
AGATCTCAAATGGAGCTGGTAGCAATGGCGATGATGATAGGTTGATTGAA
GAAGAAGAGGCAGAGGAGGGTGTTGATAGCCTTGAGGCTGCCATCAAGTG
TGCTGAAATTCAAAATGCCATTTCTGTTGGGGCAACATCATTTTTGTTTC
CACAGTACAAGTACCTCAGTGTGGTCATGGGCGTATTCAGCACCATCATC
TTCCTTTTCCAAGGTTCGGTTAAGGGCTTCAGCACCAAACATGAACCCTG
CACATACAACACAGGGATTATGTGCAAACCAGCTCTTGTAAATGCTATTT
TTAGCACCATTGCTTTCTTGCTCGGAGCCCTTACTTCAACCCTCTCAGGT
TTTCTTGGCATGAAGATCACAACCTATGCAAATGCCAGAACAACTTTAGA
AGCAAGGAAAGGAGTCAGCAAGGCTTTTATTACAGCTTTCCGAGCTCGTG
CAGTGATGGGCTTGCTCCTTGCTGCCAATTGCCTTTTGGTGTTGTATGTC
TCCATCAATTTATTCAAACTCTATTATGATGATGACTGGGAGGGACTTTA
TGAATCTATTACTGGTTATGATTTAAGTGGCTCCTCAATGGCACTCTTTG
GAAGAGTTGGGGGAGGTATATATACAAAAGCAGTTGATGTANGAAGCTGA
CCTTGTAGGAAAAGTTGAGAGAAATATTC
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