FC878425

Overview
NameFC878425
Unique NameFC878425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4214 contig Ccv1_Contig4214:7..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.775e-63
Identity = 124/223 (55.61%), Postives = 148/223 (66.37%), Query Frame = 1
Query:  214 APSLFTNI-------IDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVAST-ARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSP 855
            A +LFT +       ID P  PSVDPKHV + NFAPV DEL PT+C ++ G LP SL G YIRNGPNPQ +PRGP H F+GDGMLH++++  G+A   SRYVKTYKY +E+  G  + PNVFSGF G+   V   A T ARVL G  N   G GLANT            GESDLPY ++ T  GDIET+GR+DFD +L  SMTAHPKTD  T ETFAF++ P
Sbjct:   82 ATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGP 304          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.685e-41
Identity = 83/209 (39.71%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  244 RPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPH 870
            +PL  +VDP+H  +GN+APV E        VDGK+PD + G Y+RNG NP   P    H F+GDGM+H+++++ G A YS R+ +T +   E+  G  IFP      +G   + + +   AR L G +N K G G+AN              E DLPY ++ T  GD+ET+GR+DFD +L ++M AHPK D  TKE FA  +     P+
Sbjct:  101 KPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFALSYDVVKKPY 309          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.415e-37
Identity = 78/217 (35.94%), Postives = 118/217 (54.38%), Query Frame = 1
Query:  220 SLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPH 870
            +L ++  D PL  + DP+    GN++PV E        V+G +PD + G YIRNG NP   P    H F+GDGM+H+++++ G A Y+ R+ KT +   E+  G  +FP      +G   + + +   AR L G +N + G G+AN              E DLPY +K T+ GD++T+GR+DFD +L ++M AHPK D  TKE  A  +     P+
Sbjct:   86 ALISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAMIAHPKLDPVTKELHALSYDVVKKPY 302          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.298e-36
Identity = 79/208 (37.98%), Postives = 112/208 (53.85%), Query Frame = 1
Query:  247 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPH 870
            PL  + DP     GNFAPV+E        V GKLPDS+ G Y+RNG NP H P    HFF+GDGM+H+++   G A Y+ R+ +T ++  ER  G  +FP      +G   + + +   AR   G V+   G G+AN              E DLPY ++ T  GD++T+GR+DFD +L ++M AHPK D  + E FA  +     P+
Sbjct:  112 PLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPY 319          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.099e-35
Identity = 85/265 (32.08%), Postives = 128/265 (48.30%), Query Frame = 1
Query:  121 QNIPFRSSQKPKICAPIQSLMGTNSSYNTKSAPSLFTNII------------DRPLHP---SVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPH 870
            Q+  F+     K+C  + +L+   ++ N K  P   T  +            +R  HP   + DP     GNF PV E        V G +P+ + G Y+RNG NP H P    H F+GDGM+H+++   G   Y+ R+ +T +   ER+ G  +FP      +G + + + +    R L G V+   G G+AN              E DLPY +K T+ GD+ET GR+DFD +L ++M AHPK D  T+E FA  +     P+
Sbjct:  115 QSPTFKPPSWKKLCNDVTNLIPKTTNQNPKLNPVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKIDPETRELFALSYDVVSKPY 379          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.175e-35
Identity = 85/217 (39.17%), Postives = 117/217 (53.92%), Query Frame = 1
Query:  211 SAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFS 852
            SA  L    +    H    P H  +GNFAPV DE  P     V G LP+ L G ++R GPNP+ MP    H+F+GDGM+H M++  G+A Y+SRYVKT + K E    G  F  +    GF+GL  MVQ     A++ +  +++  G G  NT             E+D PY++K   +GD++TLG  D+D+ L  S TAHPK D  T E F F ++
Sbjct:   29 SAVDLIEKAVVYLFHDKSKPCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLF-MVQMQLLRAKLKV--IDVSYGVGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLSHSFTAHPKVDPFTDEMFTFGYA 242          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.072e-34
Identity = 88/267 (32.96%), Postives = 128/267 (47.94%), Query Frame = 1
Query:  130 PFRSSQKPKICAPIQSLMGTNSSY-NTKSAPSLFTNIID-------------RPLHPSVDPKHVFTGNFAPVDELGPTECPV-----VDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAI-YSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPH 870
            PF+    P + +P+ S +    +Y N      L   ++D             RPL    DP    +GNFAPV+E     CPV     V G++P  L G YIRNG NP   P    H F+GDGM+H++ +     + YS RY KT +   E   G  +FP      +G   + +    TAR  +G V+  +G G+AN              E DLPY +K   +GD+ET+GR+ FD+++ +S+ AHPK D TT +     ++    PH
Sbjct:   37 PFKIPTLPDLTSPVPSPVKLKPTYPNLNLLQKLAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPVNE-----CPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDATTGDLHTLSYNVLKKPH 298          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.072e-34
Identity = 85/219 (38.81%), Postives = 118/219 (53.88%), Query Frame = 1
Query:  205 TKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFS 852
            T  A  L   II +  + S  P H  +GNFAPV DE  P +   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+VKT ++K E    G  F  +    G +GL+ MV      A++ +  +++  G G ANT             E D PY IK   +GD++TLG  D+D+ L  + TAHPK D  T E F F +S
Sbjct:   23 TSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLL-MVNMQMLRAKLKI--LDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYS 238          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.908e-33
Identity = 78/210 (37.14%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  223 LFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFS 852
            L   ++ + L+ S  P H  TGNF PV E  PT+   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+V+T + K E   G   F  +     GL  ++       R  +  ++L  G G  NT             E+D PY IK   +GD++TLG  D+D+ L  S TAHPK D  T E F+F ++
Sbjct:   32 LLEKLLVKFLYDSSLPHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKI-GDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFSFGYA 240          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.104e-33
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 1
Query:  247 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPH 870
            PL  + DPK    GNFAPV E    +   V GK+P  + G Y+RNG NP + P    HFF+GDGM+H+++ + G A Y+ R+ +T +   E+  G  +FP      +G   + + +   AR L   V+   G G+AN              E DLPY ++ T  GD+ T+GR+DF+ +L ++M AHPK D    +  A  +     P+
Sbjct:  131 PLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQLNSTMIAHPKLDPVNGDLHALSYDVVQKPY 338          
The following BLAST results are available for this feature:
BLAST of FC878425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD4_ARATH2.775e-6355.61Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED5_ARATH8.685e-4139.71Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED2_ARATH3.415e-3735.949-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED3_ARATH1.298e-3637.989-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED9_ARATH1.099e-3532.089-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
CCD_CROSA4.175e-3539.17Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
NCED6_ARATH2.072e-3432.969-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD1_PEA2.072e-3438.81Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU3.908e-3337.14Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
NCED1_PHAVU5.104e-3334.629-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878425 ID=FC878425; Name=FC878425; organism=Citrus clementina; type=EST; length=877bp
AAACATCATCCACTCTACATATCTACCAAAAGAATGGATCTCATGAATTA
CTTATCCTTAAAGATATCATACAATTCTCCACCAAAACCAAAGTTCACAT
ATTACAATCACATCAACGAACAAAATATCCCATTCCGTTCTTCTCAAAAG
CCAAAAATATGTGCACCCATACAATCTTTAATGGGAACAAATTCATCCTA
CAACACCAAATCCGCGCCATCATTGTTTACAAACATTATTGATCGTCCTC
TTCATCCTTCTGTTGATCCAAAGCATGTCTTCACCGGAAACTTTGCTCCG
GTGGACGAGCTTGGCCCGACTGAGTGCCCGGTGGTTGATGGCAAGCTTCC
GGACTCTCTAACCGGCACGTACATCCGAAACGGACCAAACCCACAGCACA
TGCCCCGTGGCCCTCTCCACTTCTTTGAAGGTGATGGCATGCTTCACTCA
ATGCAATTATCTAAAGGGCGTGCAATTTACAGTAGCCGCTATGTCAAGAC
TTACAAGTACAAGCTCGAGAGAGATGCCGGTGGCCAAATTTTCCCCAACG
TCTTCTCAGGATTTTATGGGCTTGTGGATATGGTTCAATGTGTTGCATCG
ACAGCAAGAGTGTTGATGGGTCACGTAAATCTCAAGAAAGGATTTGGTTT
GGCCAATACAAGTCTTGCTTTCTTTTCGTCTAAGCTTCTTGCTCTTGGTG
AGTCCGATTTGCCCTACATTATAAAATGTACTCGAGAAGGCGACATTGAG
ACTTTAGGGAGATGGGATTTTGATGAAGAATTATTTGCAAGCATGACTGC
GCATCCAAAGACAGACATGACCACAAAGGAGACTTTTGCTTTCAAATTTA
GCCCCTTTTTTTCCCCTCATNCTACAT
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