FC878429

Overview
NameFC878429
Unique NameFC878429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: PAG15_HUMAN (Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.298e-43
Identity = 104/273 (38.10%), Postives = 153/273 (56.04%), Query Frame = 1
Query:   64 GLRFIVAMSLFCTCQAISRGLHP-LILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMP 879
            GL F++ + +     A+  G HP ++LVPG+ GNQLEA+L    KP+ +     Y   K +E +F +W +  +LLP    C+ D + L Y+          GV+ RVP FG T SL +LDP+     +  Y  ++VESL   GY  GE + GAPYD+R        P+  G  FL  L+++IE+     GG PV+LV+HS+G +  L  L R P  W+ K+I+ FV+L APWGG  + +   AS     +P + PL +R++QRS+ S  WL+P
Sbjct:   16 GLLFLLLLLMLLADPALPAGRHPPVVLVPGDLGNQLEAKLD---KPTVV----HYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSK--SSVGSYFHTMVESLVGWGYTRGEDVRGAPYDWRRA------PNENGPYFLA-LREMIEEMYQLYGG-PVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIPVIGPLKIREQQRSAVSTSWLLP 271          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: PAG15_MOUSE (Group XV phospholipase A2 OS=Mus musculus GN=Pla2g15 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.982e-41
Identity = 97/250 (38.80%), Postives = 142/250 (56.80%), Query Frame = 1
Query:  130 PLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMP 879
            P++LVPG+ GNQLEA+L    K    LC+      K ++ +F LW +  +LLP    C+ D + L Y+          GV+ RVP FG T S+ +LDP+   + +  Y  ++VESL   GY  GE + GAPYD+R        P+  G  FL  L+++IE+     GG PV+LV+HS+G + +L  L R P  W+ K+I  FV+L APWGG  + +   AS     +P + PL +R++QRS+ S  WL+P
Sbjct:   39 PVVLVPGDLGNQLEAKLDKP-KVVHYLCS------KKTDSYFTLWLNLELLLPVIIDCWIDNIRLVYNRTSRATQFPDGVDVRVPGFGETFSMEFLDPSK--RNVGSYFYTMVESLVGWGYTRGEDVRGAPYDWRRA------PNENGPYFLA-LREMIEEMYQMYGG-PVVLVAHSMGNVYMLYFLQRQPQVWKDKYIHAFVSLGAPWGGVAKTLRVLASGDNNRIPVIGPLKIREQQRSAVSTSWLLP 271          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: LCAT_RABIT (Phosphatidylcholine-sterol acyltransferase OS=Oryctolagus cuniculus GN=LCAT PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.001e-40
Identity = 100/261 (38.31%), Postives = 149/261 (57.09%), Query Frame = 1
Query:  112 ISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMPNPKVF 894
            +S    P+ILVPG  GNQLEA+L    KPS +    W    + +E +F +W D ++ LP    C+ D   + Y+        SPGV+ RVP FG T S+ YLD N    ++ GYM +LV++L   GYV  ET+  APYD+R        PS+   ++   L  L+E+  ++  GKPV L+ HSLG L +L  L R P  W+ +FI  F++L APWGG+++ ML  AS    G+P +  + +R+EQR + ++ W+ P+  V+
Sbjct:   42 LSNHTRPVILVPGCLGNQLEAKLD---KPSVV---NWM-CYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGRVVISPGVQIRVPGFGKTYSVEYLDNN----KLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRL------EPSQQ-EEYYGKLAGLVEEM-HAAYGKPVFLIGHSLGCLHLLYFLLRQPQSWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPLMSSIKLREEQRITTTSPWMFPSQGVW 283          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: LCAT_RAT (Phosphatidylcholine-sterol acyltransferase OS=Rattus norvegicus GN=Lcat PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.613e-40
Identity = 98/258 (37.98%), Postives = 144/258 (55.81%), Query Frame = 1
Query:  112 ISRGLHPLILVPGNGGNQLEARLTSDYKPSSL--LCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMP 879
            +S    P+ILVPG  GN+LEA+L    KP+ +  LC R       +E +F +W D ++ LP    C+ D   + Y+       N+PGV+ RVP FG T S+ YLD N    ++ GY+ +LV++L   GYV  ET+  APYD+R          R   ++ Q L  L+E+   + G KPV L+ HSLG L VL  L R P  W+  FI  F++L APWGG+++ M   AS    G+P +  + +R+EQR + ++ W+ P
Sbjct:   42 LSNHTRPVILVPGCMGNRLEAKLD---KPNVVNWLCYR------KTEDFFTIWLDFNMFLPLGVDCWIDNTRVVYNRSSGHMSNAPGVQIRVPGFGKTYSVEYLDDN----KLAGYLNTLVQNLVNNGYVRDETVRAAPYDWRLA-------PRQQDEYYQKLAGLVEEMYAAYG-KPVFLIGHSLGCLHVLHFLLRQPQSWKDHFIDGFISLGAPWGGSIKPMRILASGDNQGIPIMSNIKLREEQRITTTSPWMFP 278          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: LCAT_MOUSE (Phosphatidylcholine-sterol acyltransferase OS=Mus musculus GN=Lcat PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.297e-39
Identity = 94/261 (36.02%), Postives = 146/261 (55.94%), Query Frame = 1
Query:  112 ISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMPNPKVF 894
            +S    P+ILVPG  GN+LEA+L    KP  +    W    + +E +F +W D ++ LP    C+ D   + Y+       N+PGV+ RVP FG T+S+ Y+D N    ++ GY+ +LV++L   GYV  ET+  APYD+R              ++ + L  L+E+   + G KPV L+ HSLG L VL  L R P  W+  FI  F++L APWGG+++ M   AS    G+P +  + +++EQR + ++ W++P P V+
Sbjct:   42 LSNHTRPVILVPGCLGNRLEAKLD---KPDVV---NWM-CYRKTEDFFTIWLDFNLFLPLGVDCWIDNTRIVYNHSSGRVSNAPGVQIRVPGFGKTESVEYVDDN----KLAGYLHTLVQNLVNNGYVRDETVRAAPYDWRLA-------PHQQDEYYKKLAGLVEEMYAAYG-KPVFLIGHSLGCLHVLHFLLRQPQSWKDHFIDGFISLGAPWGGSIKAMRILASGDNQGIPILSNIKLKEEQRITTTSPWMLPAPHVW 283          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: LCAT_HUMAN (Phosphatidylcholine-sterol acyltransferase OS=Homo sapiens GN=LCAT PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.889e-39
Identity = 95/257 (36.96%), Postives = 147/257 (57.20%), Query Frame = 1
Query:  112 ISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMPN 882
            +S    P+ILVPG  GNQLEA+L    KP  +    W    + +E +F +W D ++ LP    C+ D   + Y+       N+PGV+ RVP FG T S+ YLD +    ++ GY+ +LV++L   GYV  ET+  APYD+R  L  G        ++ + L  L+E+  ++  GKPV L+ HSLG L +L  L R P  W+ +FI  F++L APWGG+++ ML  AS    G+P +  + +++EQR + ++ W+ P+
Sbjct:   42 LSNHTRPVILVPGCLGNQLEAKLD---KPDVV---NWM-CYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGLVSNAPGVQIRVPGFGKTYSVEYLDSS----KLAGYLHTLVQNLVNNGYVRDETVRAAPYDWR--LEPGQQ-----EEYYRKLAGLVEEM-HAAYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRITTTSPWMFPS 279          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: LCAT_PAPAN (Phosphatidylcholine-sterol acyltransferase OS=Papio anubis GN=LCAT PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.773e-39
Identity = 95/257 (36.96%), Postives = 146/257 (56.81%), Query Frame = 1
Query:  112 ISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMPN 882
            +S    P+ILVPG  GNQLEA+L    KP  +    W    + +E +F +W D ++ LP    C+ D   + Y+       N+PGV+ RVP FG T S+ YLD +    ++ GY+ +LV++L   GYV  ET+  APYD+R  L  G        ++   L  L+E+  ++  GKPV L+ HSLG L +L  L R P  W+ +FI  F++L APWGG+++ ML  AS    G+P +  + +++EQR + ++ W+ P+
Sbjct:   42 LSNHTRPVILVPGCLGNQLEAKLD---KPDVV---NWM-CYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGLVSNAPGVQIRVPGFGKTYSVEYLDSS----KLAGYLHTLVQNLVNNGYVRDETVRAAPYDWR--LEPGQQ-----EEYYHKLAGLVEEM-HAAYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRITTTSPWMFPS 279          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: LCAT_CHICK (Phosphatidylcholine-sterol acyltransferase (Fragment) OS=Gallus gallus GN=LCAT PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.364e-35
Identity = 87/250 (34.80%), Postives = 137/250 (54.80%), Query Frame = 1
Query:  130 PLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMP 879
            P  LVPG  GNQLEA+L    KP  +    W    + +E +F +W + +  LP    C+ D   + Y+       N+PGV  RVP FG T S+ YLD +    ++ GY+ +LV++L   GYV  +T+  APYD+R G        +   ++ Q+LK LIE+  +    + V L+ HS+G L VL  L +    W+ ++I  F++L APWGG+V+ +   AS    G+P +  + +R+EQR + ++ W+ P
Sbjct:   46 PWCLVPGFLGNQLEAKLD---KPDVV---NWM-CYRKTEDYFTIWLNLNTFLPVGVDCWIDNTRVVYNRTARKMTNAPGVHIRVPGFGKTYSVEYLDQS----KLAGYLHTLVQNLVNNGYVRDQTVRAAPYDWRVG-------PQEQPEYFQNLKALIEEMHDEYQQR-VFLIGHSMGNLNVLYFLLQQKQAWKDQYIGGFISLGAPWGGSVKPLRVLASGDNQGIPLMSNIKLREEQRMTTTSPWMFP 276          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: LCAT_MICMN (Phosphatidylcholine-sterol acyltransferase (Fragment) OS=Micromys minutus GN=LCAT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.399e-19
Identity = 64/210 (30.48%), Postives = 101/210 (48.10%), Query Frame = 1
Query:  250 WFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMP 879
            +F +W D ++ LP    C+ D   + Y+       N+PGV+ RVP FG T S+ YLD N    ++ GY+ +LV++L    YV  ET+  APYD+R        PS+   ++ Q L +L+E+  ++  GKPV L+ H LG L VL  L                 L   W                G+P +  + +++EQR + ++ W+ P
Sbjct:    1 FFTIWLDINMFLPLGVDCWIDNTRVVYNRSSGRMSNAPGVQIRVPGFGKTYSVEYLDDN----KLAGYLHTLVQNLVNNAYVRDETVRAAPYDWRLA------PSQ-QDEYYQKLAELVEEMYDAY-GKPVFLIGHRLGCLHVLHFL-----------------LHQSW---------------KGIPIMSNIKLKEEQRITTTSPWMFP 166          
BLAST of FC878429 vs. ExPASy Swiss-Prot
Match: LCAT_TATKG (Phosphatidylcholine-sterol acyltransferase (Fragment) OS=Tatera kempi gambiana GN=LCAT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.796e-18
Identity = 67/212 (31.60%), Postives = 98/212 (46.23%), Query Frame = 1
Query:  259 LWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHFGSTQSLLYLDPNFIWKEITGYMASLVESLERVGYVTGETLFGAPYDFRYGLAAGGHPSRVGSKFLQDLKDLIEKASNSNGGKPVILVSHSLGGLCVLQLLNRNPLPWRKKFIKHFVALSAPWGGTVEEMLTFASXSTLGVPFVDPLDVRQEQRSSESNLWLMPNPKVF 894
            +W D ++ L     C+ D   + Y+       N+PGVE RVP FG T S+ YLD N    ++  YM +LV++L   GYV  ET+  APYD+R        PS+    + Q L  LIE+   +  GKPV L+ HSLG L VL  L R                                    G+P +  + +R+EQR + ++ W+ P+  V+
Sbjct:    2 IWLDLNMFLSLGVDCWIDNTRVVYNRSSGRVSNAPGVEIRVPGFGKTYSVEYLDDN----KLAEYMHTLVQNLVNNGYVRDETVRAAPYDWRL------EPSQ-QDDYYQKLAGLIEEMYAAY-GKPVFLIGHSLGCLHVLYFLLRQ-----------------------------------GIPIMSSIKLREEQRITTTSPWMFPDRDVW 166          
The following BLAST results are available for this feature:
BLAST of FC878429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PAG15_HUMAN3.298e-4338.10Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G... [more]
PAG15_MOUSE8.982e-4138.80Group XV phospholipase A2 OS=Mus musculus GN=Pla2g... [more]
LCAT_RABIT2.001e-4038.31Phosphatidylcholine-sterol acyltransferase OS=Oryc... [more]
LCAT_RAT2.613e-4037.98Phosphatidylcholine-sterol acyltransferase OS=Ratt... [more]
LCAT_MOUSE1.297e-3936.02Phosphatidylcholine-sterol acyltransferase OS=Mus ... [more]
LCAT_HUMAN2.889e-3936.96Phosphatidylcholine-sterol acyltransferase OS=Homo... [more]
LCAT_PAPAN3.773e-3936.96Phosphatidylcholine-sterol acyltransferase OS=Papi... [more]
LCAT_CHICK7.364e-3534.80Phosphatidylcholine-sterol acyltransferase (Fragme... [more]
LCAT_MICMN7.399e-1930.48Phosphatidylcholine-sterol acyltransferase (Fragme... [more]
LCAT_TATKG4.796e-1831.60Phosphatidylcholine-sterol acyltransferase (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878429 ID=FC878429; Name=FC878429; organism=Citrus clementina; type=EST; length=894bp
TATATGGCTATCCCCTCCCTCGGTGCATCAAGAGATAAAAGCGAAAAAAG
GAAAGAGATGAAAGGATTGCGTTTCATAGTAGCAATGTCGTTGTTTTGCA
CGTGTCAAGCAATCAGTCGCGGTCTCCACCCTCTGATCTTGGTACCCGGC
AACGGCGGAAACCAGCTAGAAGCGCGGCTGACCAGTGATTACAAGCCCTC
GAGCCTGCTGTGCAACCGTTGGTACCCAATTGTGAAGGACAGTGAAGGGT
GGTTCAGGCTGTGGTTCGACCCCAGTGTTTTGTTACCTCCGTTTACTAAG
TGCTTTGCCGACCGCATGATGCTTTACTATGATCCTGATTTGGATGATTT
TCACAATTCCCCTGGCGTCGAAACTAGAGTCCCTCACTTTGGTTCCACTC
AGTCCCTTCTCTACCTCGACCCCAATTTTATTTGGAAGGAAATTACAGGG
TACATGGCATCTTTAGTGGAGTCTCTAGAACGAGTTGGCTATGTCACTGG
TGAAACTCTCTTCGGAGCTCCATACGATTTCCGATACGGATTGGCAGCAG
GAGGTCATCCGTCCCGCGTTGGCTCCAAGTTTTTGCAGGACCTGAAGGAT
TTGATAGAAAAAGCAAGCAATTCCAATGGTGGGAAGCCAGTTATACTTGT
TTCACACAGCTTGGGAGGGCTTTGCGTCCTACAACTTCTTAACCGAAACC
CTTTACCCTGGCGCAAGAAATTTATCAAACACTTTGTCGCTCTGTCTGCT
CCGTGGGGTGGCACCGTCGAAGAAATGCTCACTTTTGCTTCANGCAGTAC
GCTAGGAGTTCCATTCGTTGATCCATTGGATGTGAGACAAGAGCAGAGGA
GCTCTGAAAGCAATCTATGGCTCATGCCTAATCCCAAAGTGTTT
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