FC878459

Overview
NameFC878459
Unique NameFC878459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10535 contig Ccv1_Contig10535:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F3_MOUSE (Transcription factor E2F3 OS=Mus musculus GN=E2f3 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.248e-22
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  537 TPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADI 812
            +P+   RYD+SLGLLTKKFI L+  + DG+LDLNKAAE L+VQKRRIYDITNVLEGI LI+KK KN ++W G   S  G + A    L  ++
Sbjct:  164 SPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEV 255          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F3_HUMAN (Transcription factor E2F3 OS=Homo sapiens GN=E2F3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.248e-22
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  537 TPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADI 812
            +P+   RYD+SLGLLTKKFI L+  + DG+LDLNKAAE L+VQKRRIYDITNVLEGI LI+KK KN ++W G   S  G + A    L  ++
Sbjct:  172 SPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEV 263          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F2_HUMAN (Transcription factor E2F2 OS=Homo sapiens GN=E2F2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 55/81 (67.90%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  519 GSPSALTPAG---SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 752
            G PS  TP       RYD+SLGLLTKKFI L+  +EDG+LDLN AAE L+VQKRRIYDITNVLEGI LI KK KN I+W G
Sbjct:  114 GLPSPKTPKSPGEKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQWVG 194          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F2_MOUSE (Transcription factor E2F2 OS=Mus musculus GN=E2f2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 55/81 (67.90%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  519 GSPSALTPAG---SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 752
            G PS  TP       RYD+SLGLLTKKFI L+  +EDG+LDLN AAE L+VQKRRIYDITNVLEGI LI KK KN I+W G
Sbjct:  116 GLPSPKTPKSPGEKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKSKNNIQWVG 196          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F5_MOUSE (Transcription factor E2F5 OS=Mus musculus GN=E2f5 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.944e-21
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 3
Query:  525 PSALTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGL 755
            PS  +  GS R++ SLGLLT KF++L++ A+DG+LDL  AA+TL V QKRRIYDITNVLEGI LIEKK KN I+WKG+
Sbjct:   30 PSRRSRGGSSRHEKSLGLLTTKFVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGV 107          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F5_HUMAN (Transcription factor E2F5 OS=Homo sapiens GN=E2F5 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.944e-21
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  453 KGNRSTPQTPVSNASEKISYHLGSPSALTPAG--SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGL 755
            +G R  PQ P + A +        P  L  AG  S R++ SLGLLT KF++L++ A+DG+LDL  AA+TL V QKRRIYDITNVLEGI LIEKK KN I+WKG+
Sbjct:   19 QGQRPPPQPPQAQAPQP-----PPPPQLGGAGGGSSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGV 117          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F4_MOUSE (Transcription factor E2F4 OS=Mus musculus GN=E2f4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.168e-20
Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:  525 PSALTPAGS-CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASI-LQADID 815
            P A  P G+  R++ SLGLLT KF++L++ A+DG+LDL  AA+TL V QKRRIYDITNVLEGIGLIEKK KN I+WKG+         AD  I L+A+I+
Sbjct:    6 PQAPPPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIE 105          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F4_HUMAN (Transcription factor E2F4 OS=Homo sapiens GN=E2F4 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.168e-20
Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:  525 PSALTPAGS-CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASI-LQADID 815
            P A  P G+  R++ SLGLLT KF++L++ A+DG+LDL  AA+TL V QKRRIYDITNVLEGIGLIEKK KN I+WKG+         AD  I L+A+I+
Sbjct:    6 PQAPPPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIE 105          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F5_RAT (Transcription factor E2F5 (Fragment) OS=Rattus norvegicus GN=E2f5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = 3
Query:  546 GSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGL 755
            GS R++ SLGLLT KF++L++ A+DG+LDL  AA+TL V QKRRIYDITNVLEGI LIEKK KN I+WKG+
Sbjct:    2 GSSRHEKSLGLLTTKFVSLLQEAQDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGV 72          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F1_HUMAN (Transcription factor E2F1 OS=Homo sapiens GN=E2F1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 3
Query:  537 TPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSI 767
            +P    RY++SL L TK+F+ L+ H+ DG++DLN AAE L+VQKRRIYDITNVLEGI LI KK KN I+W G   ++
Sbjct:  121 SPGEKSRYETSLNLTTKRFLELLSHSADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLIAKKSKNHIQWLGSHTTV 197          
The following BLAST results are available for this feature:
BLAST of FC878459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
E2F3_MOUSE1.248e-2258.70Transcription factor E2F3 OS=Mus musculus GN=E2f3 ... [more]
E2F3_HUMAN1.248e-2258.70Transcription factor E2F3 OS=Homo sapiens GN=E2F3 ... [more]
E2F2_HUMAN6.194e-2267.90Transcription factor E2F2 OS=Homo sapiens GN=E2F2 ... [more]
E2F2_MOUSE8.089e-2267.90Transcription factor E2F2 OS=Mus musculus GN=E2f2 ... [more]
E2F5_MOUSE8.944e-2165.38Transcription factor E2F5 OS=Mus musculus GN=E2f5 ... [more]
E2F5_HUMAN8.944e-2155.77Transcription factor E2F5 OS=Homo sapiens GN=E2F5 ... [more]
E2F4_MOUSE1.168e-2058.00Transcription factor E2F4 OS=Mus musculus GN=E2f4 ... [more]
E2F4_HUMAN1.168e-2058.00Transcription factor E2F4 OS=Homo sapiens GN=E2F4 ... [more]
E2F5_RAT5.797e-2069.01Transcription factor E2F5 (Fragment) OS=Rattus nor... [more]
E2F1_HUMAN3.758e-1958.44Transcription factor E2F1 OS=Homo sapiens GN=E2F1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP05RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878459 ID=FC878459; Name=FC878459; organism=Citrus clementina; type=EST; length=820bp
CCCTCCCTCTCTAGATCTTATTTCTCCCCAGTTTCTCATCCCACTTCCTC
TCTTTCTCTCATATTTTCGTTTTCTTCTCGCCATCTCTCATCCCAATGTC
CGGCGCATCCCGAGCCCCCTACCGAACCGCGCCGCCACCGCCAAATCCGC
CTCGTTCGGGGCCGATCGTCCCACCAATAAAGCGCCACCTTGCTTTTGTC
ACGACTAAGCCGCCTTTTGTTCCTTCCGATGATTACCATCGCTTCTCGAA
CACTCGCAGAGCCGCCGATCAGGAGCCTGAAGCAATTGTTGTTAGATCTC
CTCAATTAAAGAGGAAGAATGGAATGGAAGACAATGAGGTTGAGACCAGT
GAGTGGGTTGGCAGTCCTGGATTGACAAACATATCTAACGGTCCCTTCCA
CACACCTGTATCTGCAAAAGGGGGAAGGGTAAACAATAGGTCAAAGGGAA
TAAAGGGAAATAGATCGACTCCTCAGACACCAGTGTCGAATGCTAGTGAG
AAAATTTCTTATCATTTAGGTTCGCCTTCTGCTCTTACTCCAGCCGGCAG
CTGCCGTTATGACAGTTCCTTGGGTCTTCTAACAAAGAAGTTCATTAATC
TGATTAAGCATGCTGAAGACGGTATACTTGACCTGAATAAAGCTGCAGAA
ACTTTAGAGGTGCAAAAGAGGAGAATATACGACATAACAAATGTATTGGA
AGGAATTGGTCTGATTGAAAAGAAGCTCAAGAACAGAATACGTTGGAAGG
GACTTGATAATTCAATTCCAGGAGAGGTAGATGCCGATGCCTCCATATTA
CAGGCTGATATTGATAATCT
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