FC878492

Overview
NameFC878492
Unique NameFC878492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10540 contig Ccv1_Contig10540:1..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878492 vs. ExPASy Swiss-Prot
Match: AXR4_ARATH (Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.631e-74
Identity = 143/236 (60.59%), Postives = 173/236 (73.31%), Query Frame = 3 
Query:  135 KQISQTKEPK-QHTNPFLFWCYLVLFVSLITLLFISFT--PQDNNPRSWFLSLDSALRHHYSNGRIIKVQTSPKRSPIELFTFQKGIDSTESVFIIHGLGLSSFAFREMINSLRSKKVNVIAVDLPGNGFSDRSTMEF-EERSDGAFQRFKDVYGLIQEKGFFWAFDQIVETGQIPYEEIMKARVLERKSVKIIELGSNEVGRVLGQVIDTFNLAPVHLVLHDSALSMSANWVAEN 830
            K  S  K PK Q  NPF FW Y  + VSL T++FIS +     N+PRSWFLSL  ALR HYSNGR IKVQ +   SPIE+F  + G   TE+V I+HGLGLSSFAF+EMI SL SK ++ +A+DLPGNGFSD+S +    +R  G   R K+VYGLIQEKG FWAFDQ++ETG +PYEEI+K +  +R+S K IELGS E  RVLGQVIDT  LAPVHLVLHDSAL +++NWV+EN
Sbjct:   28 KSESTMKNPKPQSQNPFPFWFYFTVVVSLATIIFISLSLFSSQNDPRSWFLSLPPALRQHYSNGRTIKVQVNSNESPIEVFVAESGSIHTETVVIVHGLGLSSFAFKEMIQSLGSKGIHSVAIDLPGNGFSDKSMVVIGGDREIGFVARVKEVYGLIQEKGVFWAFDQMIETGDLPYEEIIKLQNSKRRSFKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALGLASNWVSEN 263
The following BLAST results are available for this feature:
BLAST of FC878492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AXR4_ARATH8.631e-7460.59Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA44BE06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878492 ID=FC878492; Name=FC878492; organism=Citrus clementina; type=EST; length=942bp
TTTCACTTCAGCTTCCAGCCAATAAGGAAAAACTGAAAAATCATCAAGAA
CGGAACATGGCGATCATAACTGACGAGCCAGAGCAAGAACCACAACAACA
AAATCAGCGGCATCAAGAGGAGCAACCAAAGCAAAAACAAATTTCACAAA
CAAAAGAACCCAAACAACACACAAACCCATTTTTATTTTGGTGCTATTTA
GTTCTTTTTGTTTCACTTATAACTCTTCTCTTCATTTCATTCACTCCTCA
AGACAACAATCCCAGGTCTTGGTTTCTCAGCTTAGACAGTGCTCTTCGCC
ATCACTACTCTAACGGCCGCATTATCAAAGTCCAAACGAGCCCTAAACGA
TCCCCCATCGAGCTTTTCACTTTCCAAAAAGGTATCGATTCGACTGAGAG
TGTGTTTATCATTCATGGCTTGGGTTTAAGTTCGTTTGCATTTCGTGAAA
TGATCAATTCTCTGAGGTCTAAAAAGGTTAATGTTATAGCCGTTGATTTG
CCCGGAAATGGGTTTTCTGATAGATCAACGATGGAGTTTGAAGAGAGATC
AGATGGGGCCTTTCAGAGGTTTAAGGATGTTTATGGGTTGATTCAAGAAA
AGGGTTTTTTTTGGGCGTTTGATCAGATTGTTGAGACTGGGCAAATTCCT
TACGAGGAGATAATGAAAGCTAGGGTTTTGGAGAGGAAGAGTGTTAAAAT
TATTGAATTGGGAAGTAATGAGGTTGGTAGGGTTTTAGGGCAAGTTATAG
ATACTTTTAATTTAGCTCCTGTGCATTTAGTTTTACATGATTCAGCTTTG
TCAATGAGTGCTAATTGGGTTGCTGAAAATCCTGGTTTATAAAAAGTCTA
ACACTTCTAGATACTGGAATTAAGCCTGCTTTGCCTCTTTTTGCATTGAA
TTTGCTGTTGATAAAGGATTTTGTTTTAAGATCTTCCTTGGA
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