FC878499

Overview
NameFC878499
Unique NameFC878499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12249 contig Ccv1_Contig12249:228..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878499 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.376e-50
Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 1 
Query:  244 GDACLVLTTDPKPRLRWTADLHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 714
            GD+ LVLTTDPKPRLRWT +LH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S      A + D          M++++ N+         +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct:   23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170
[Close]
BLAST of FC878499 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  274 PKPRLRWTADLHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 438
            P PRLRWT +LH  FV AV  LGG  KATPK +++ M VKGLT+ H+KSHLQ YR
Sbjct:   22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
The following BLAST results are available for this feature:
BLAST of FC878499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH5.376e-5065.61Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH5.255e-1363.64Putative Myb family transcription factor At1g14600... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA44BE08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878499 ID=FC878499; Name=FC878499; organism=Citrus clementina; type=EST; length=816bp
TCACTCTCTCTTTCTAACCTCAGCTCAAGCCAAAGCTGAAGCTGAATCCT
TGCTGGTGAAGCTCAAAGCCCTCCTTGCTCCTCCTTTAATCTTCTCTCTT
CGCTCGCTCACTCGTCTTGATTTCTTTTTCGAGATACTGCATTCTTGAGT
CTTTGATAGATGTACTCGGCGATTCACTCGCTGCCACTGGACGGTGGCCA
CCCCGACTTTCAAGGGGGCCCCCTCGACGGCACCAATCTCCCCGGCGACG
CCTGCTTGGTCTTAACCACCGATCCCAAGCCCCGCCTCCGCTGGACCGCT
GACCTTCACGACCGCTTCGTCGATGCTGTCACCCAGCTCGGTGGCCCCGA
CAAAGCAACACCCAAGACTATCATGAGAACGATGGGAGTGAAAGGCCTTA
CCCTTTATCATCTCAAATCACATCTTCAGAAGTACCGCTTGGGAAAGCAA
GCGTGCAAGGAAACGACAGAGAACTCCAAGGATGTTTCTTGTGTTGCTGA
AAGTCAGGACACTGGTTCATCAACAACATCGTCAACCAGAATGGTAGCGC
AAGATCCAAATGATGGTTACCAGGTTACTGAGGCTTTGCGAGTACAGATG
GAAGTCCAACGAAGGCTTCATGAGCAGCTGGAGGTTCAGCGACGGCTCCA
ACTCCGAATTGAAGCGCAAGGCAAATACCTACAGTCAATACTTGAGAAAG
CTTGTAAAGCTCTGAATGATCAGGCCATCGTGGCTGCTGGGCTTGAAGCT
GCTAGAGAGGAGCTTTCCGAACTTGCCATCAAAGTTTCCAATGATTGTNC
AGGGATGGTCCCTCTG
back to top