FC878501

Overview
NameFC878501
Unique NameFC878501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10764 contig Ccv1_Contig10764:134..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKF1_ARATH (Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 7.624e-106
Identity = 188/291 (64.60%), Postives = 231/291 (79.38%), Query Frame = 3
Query:    3 DVYKGRRLSDNLIVALKEVHDYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDGNSQPCEPNAPYQDNMSEAPQVDLEVEDASPEGDVNQEQGIMSREDYFRALDELKAKNSI-DETDKDTHVHDGDTSCFATCTTSDVEDDLFKGTYSYDAEDGGDGRQGALTSCVGTRWFRAPELLYGSTSYGLEVDLWSLGCIF 872
            DVY+ RRLSD LIVALKE+ DYQSAFREI+AL IL  SPNVVV+HEYFWRE+E+AVLVLEFLR+DLA VI + K+K++  G  G SVGEIKRWM+QIL+GVDACHRN IVHRDLKPGN+LI DDGVLKLADFGQARIL+ ++  A D N Q  +         SE P+V  + E++  +G   QE+  MS+++YFR ++ELKAK  + D+TDKD++VHDGD SC ATCT S+++DDL + ++SYDA++  D  QG +TSCVGTRWFR PELLYGST YGLEVDLWSLGC+F
Sbjct:   34 DVYRARRLSDGLIVALKEIFDYQSAFREIDALTILNGSPNVVVMHEYFWREEENAVLVLEFLRSDLAAVIRDGKRKKKVEGGDGFSVGEIKRWMIQILTGVDACHRNLIVHRDLKPGNMLISDDGVLKLADFGQARILMEHDIVASDENQQAYKLE-DKDGETSEPPEVIPDYENSPRQGSDGQEREAMSKDEYFRQVEELKAKQVVRDDTDKDSNVHDGDISCLATCTVSEMDDDLGRNSFSYDADEAVDDTQGLMTSCVGTRWFRPPELLYGSTMYGLEVDLWSLGCVF 323          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKF1_ORYSJ (Cyclin-dependent kinase F-1 OS=Oryza sativa subsp. japonica GN=CDKF-1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.931e-65
Identity = 145/295 (49.15%), Postives = 188/295 (63.73%), Query Frame = 3
Query:    3 DVYKGRRLSDNLIVALKEVHDYQSAFREIEALQILQNSPNVVVLHEYFWRED-EDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDGNSQPCEPNAPYQDNMSEAPQVDLEVEDASPEGD----VNQEQGIMSREDYFRALDELKAKNSIDETDKDTHVHDGDTSCFATCTTSDVEDDLFKGTYSYDAEDGG-DGRQGALTSCVGTRWFRAPELLYGSTSYGLEVDLWSLGCI 869
            DVY+GRR SD   VALKEVHD  SA RE +AL     S +VV L ++F   D +D VLVLE+L  DL+ V+  +   R       +   + KRWM+Q+L GV ACH   +VHRDLKP NLLI +DGVLK+AD GQARIL   E     G   P E ++  +  +S+   V   V++  P  D      QE   ++  DY   +D+L+AK++  + DK   + DG+ SC ATC+T+D++DD F+ +YSYDAE+G  +   GA TSCVGTRWFRAPELLYGST+YG EVDLWSLGCI
Sbjct:   37 DVYRGRRRSDGAPVALKEVHDAVSARREADALLAAAPSRHVVALLDHFPGGDHDDDVLVLEWLPLDLSAVVRAAAAARPS----ALPAAQRKRWMLQVLEGVAACHSAGVVHRDLKPANLLISEDGVLKVADLGQARIL--QETGTYQG-MHPYEQSSGVEPWVSQQRAVLHGVKENHPSHDSETQTGQEPERLTAADYLHEMDQLRAKSTHGDVDK-MSLQDGNASCLATCSTADIDDDPFRASYSYDAEEGMLEEESGAFTSCVGTRWFRAPELLYGSTNYGQEVDLWSLGCI 323          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKF1_ORYSI (Cyclin-dependent kinase F-1 OS=Oryza sativa subsp. indica GN=CDKF-1 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.114e-64
Identity = 145/295 (49.15%), Postives = 187/295 (63.39%), Query Frame = 3
Query:    3 DVYKGRRLSDNLIVALKEVHDYQSAFREIEALQILQNSPNVVVLHEYFWRED-EDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDGNSQPCEPNAPYQDNMSEAPQVDLEVEDASPEGD----VNQEQGIMSREDYFRALDELKAKNSIDETDKDTHVHDGDTSCFATCTTSDVEDDLFKGTYSYDAEDGG-DGRQGALTSCVGTRWFRAPELLYGSTSYGLEVDLWSLGCI 869
            DVY+GRR SD   VALKEVHD  SA RE +AL     S +VV L ++F   D +D VLVLE+L  DL+ V+  +   R           + KRWM+Q+L GV ACH   +VHRDLKP NLLI +DGVLK+AD GQARIL   E     G   P E ++  +  +S+   V   V++  P  D      QE   ++  DY   +D+L+AK++  + DK   + DG+ SC ATC+T+D++DD F+ +YSYDAE+G  +   GA TSCVGTRWFRAPELLYGST+YG EVDLWSLGCI
Sbjct:   37 DVYRGRRRSDGAPVALKEVHDAVSARREADALLAAAPSRHVVALLDHFPGGDHDDDVLVLEWLPLDLSAVVRAAAAARPSAPP----AAQRKRWMLQVLEGVAACHSAGVVHRDLKPANLLISEDGVLKVADLGQARIL--QETGTYQG-MHPYEQSSGVEPWVSQQRAVLHGVKENHPSHDSETQTGQEPERLTAADYLHEMDQLRAKSTHGDVDK-MSLQDGNASCLATCSTADIDDDPFRASYSYDAEEGMLEEESGAFTSCVGTRWFRAPELLYGSTNYGQEVDLWSLGCI 323          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: KIN28_YEAST (Serine/threonine-protein kinase KIN28 OS=Saccharomyces cerevisiae GN=KIN28 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.688e-18
Identity = 61/144 (42.36%), Postives = 81/144 (56.25%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARIL 416
            VY G + S    +A+KE+   +       SA RE++ LQ +Q+ PNV+ L + F   D +  LVLEFL TDL  VI +             +  +IK WM+  L GV  CHRN I+HRDLKP NLL   DG +K+ADFG AR +
Sbjct:   21 VYLGCQHSTGRKIAIKEIKTSEFKDGLDMSAIREVKYLQEMQH-PNVIELIDIFMAYD-NLNLVLEFLPTDLEVVIKDKSIL--------FTPADIKAWMLMTLRGVYHCHRNFILHRDLKPNNLLFSPDGQIKVADFGLARAI 154          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK20_PONAB (Cell division protein kinase 20 OS=Pongo abelii GN=CDK20 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.742e-17
Identity = 59/155 (38.06%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDGN 449
            V+K + +    IVALK+V   +        A REI+ALQ ++++  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG+
Sbjct:   18 VFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEMEDNQYVVQLKAVF-PHSAGFVLAFEFMLSDLAEVVRHAQ--------RPLAQAQVKSYLQMLLKGVSFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDGS 157          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK20_RAT (Cell division protein kinase 20 OS=Rattus norvegicus GN=Cdk20 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.275e-17
Identity = 60/154 (38.96%), Postives = 84/154 (54.55%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDG 446
            V+K + +    IVALK+V   +        A REI+ALQ +++S  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG
Sbjct:   18 VFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEIEDSQYVVQLKAVF-PHGAGFVLAFEFMLSDLAEVVRHAQ--------RPLAPAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDG 156          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK20_MOUSE (Cell division protein kinase 20 OS=Mus musculus GN=Cdk20 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.275e-17
Identity = 60/154 (38.96%), Postives = 84/154 (54.55%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDG 446
            V+K + +    IVALK+V   +        A REI+ALQ +++S  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG
Sbjct:   18 VFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEIEDSQYVVQLKAVF-PHGAGFVLAFEFMLSDLAEVVRHAQ--------RPLAPAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDG 156          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK2_XENLA (Cell division protein kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.881e-17
Identity = 60/142 (42.25%), Postives = 80/142 (56.34%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-DYQS------AFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK R      IVALK++  D ++      A REI  L+ L N PN+V L +    E++   LV EFL  DL       KK  +     GIS+  +K ++ Q+L G+  CH + ++HRDLKP NLLI  DG +KLADFG AR
Sbjct:   18 VYKARNRETGEIVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLLDVIHTENK-LYLVFEFLNQDL-------KKFMDGSNISGISLALVKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINSDGAIKLADFGLAR 150          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK20_HUMAN (Cell division protein kinase 20 OS=Homo sapiens GN=CDK20 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.069e-17
Identity = 59/155 (38.06%), Postives = 85/155 (54.84%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDGN 449
            V+K + +    IVALK+V   +        A REI+ALQ ++++  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG+
Sbjct:   18 VFKAKHVETGEIVALKKVALRRLEDGFPNQALREIKALQEMEDNQYVVQLKAVF-PHGGGFVLAFEFMLSDLAEVVRHAQ--------RPLAQAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDGS 157          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK17_HUMAN (Cell division protein kinase 17 OS=Homo sapiens GN=CDK17 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.647e-17
Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = 3
Query:    6 VYKGR-RLSDNLIVALKEVH-DYQ-----SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKGR +L++NL VALKE+  +++     +A RE+  L+ L+++ N+V LH+     D+   LV E+L  DL       K+  +D G+  +S+  +K ++ QIL G+  CHR  ++HRDLKP NLLI + G LKLADFG AR
Sbjct:  206 VYKGRSKLTENL-VALKEIRLEHEEGAPCTAIREVSLLKDLKHA-NIVTLHDIV-HTDKSLTLVFEYLDKDL-------KQYMDDCGNI-MSMHNVKLFLYQILRGLAYCHRRKVLHRDLKPQNLLINEKGELKLADFGLAR 336          
The following BLAST results are available for this feature:
BLAST of FC878501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CDKF1_ARATH7.624e-10664.60Cyclin-dependent kinase F-1 OS=Arabidopsis thalian... [more]
CDKF1_ORYSJ2.931e-6549.15Cyclin-dependent kinase F-1 OS=Oryza sativa subsp.... [more]
CDKF1_ORYSI1.114e-6449.15Cyclin-dependent kinase F-1 OS=Oryza sativa subsp.... [more]
KIN28_YEAST2.688e-1842.36Serine/threonine-protein kinase KIN28 OS=Saccharom... [more]
CDK20_PONAB1.742e-1738.06Cell division protein kinase 20 OS=Pongo abelii GN... [more]
CDK20_RAT2.275e-1738.96Cell division protein kinase 20 OS=Rattus norvegic... [more]
CDK20_MOUSE2.275e-1738.96Cell division protein kinase 20 OS=Mus musculus GN... [more]
CDK2_XENLA3.881e-1742.25Cell division protein kinase 2 OS=Xenopus laevis G... [more]
CDK20_HUMAN5.069e-1738.06Cell division protein kinase 20 OS=Homo sapiens GN... [more]
CDK17_HUMAN8.647e-1742.96Cell division protein kinase 17 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878501 ID=FC878501; Name=FC878501; organism=Citrus clementina; type=EST; length=872bp
CCGACGTGTACAAGGGCCGGCGATTATCGGACAACCTGATCGTCGCGCTG
AAGGAGGTCCACGACTACCAATCGGCGTTCCGAGAAATCGAGGCGCTGCA
GATCCTACAGAACTCACCGAACGTGGTGGTTTTGCACGAGTACTTTTGGC
GGGAGGACGAGGACGCCGTGCTGGTGCTGGAGTTTCTGAGGACCGATTTG
GCGACGGTGATTGCGGAGTCCAAGAAGAAGAGAGAGGACCGGGGCGATCG
TGGAATCAGCGTCGGTGAGATTAAGAGATGGATGGTCCAGATTTTGTCTG
GAGTGGACGCCTGTCACAGGAATACGATCGTTCATCGGGATTTGAAGCCT
GGGAATTTGTTGATCGGCGATGATGGGGTTCTAAAGTTGGCCGATTTTGG
CCAGGCAAGGATACTCCTGGGTAATGAATTCGATGCTCCTGATGGTAATT
CTCAGCCTTGTGAACCCAATGCTCCATATCAAGATAACATGTCTGAAGCT
CCACAAGTTGATCTTGAGGTAGAAGATGCATCCCCAGAAGGAGATGTTAA
TCAAGAGCAGGGTATAATGAGTAGAGAAGATTATTTTAGGGCATTAGACG
AACTAAAGGCTAAGAACTCCATAGATGAGACTGATAAGGATACGCATGTT
CATGATGGAGATACGTCATGTTTTGCAACATGCACAACCAGCGATGTAGA
AGATGATCTTTTCAAGGGTACCTATTCTTATGACGCAGAGGATGGTGGAG
ATGGTAGACAAGGTGCCCTCACTTCCTGTGTTGGAACTCGCTGGTTCAGG
GCCCCTGAACTACTTTATGGATCCACATCCTATGGACTTGAGGTTGATCT
GTGGTCATTGGGCTGCATATTT
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