FC878533

Overview
NameFC878533
Unique NameFC878533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6413 contig Ccv1_Contig6413:28..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 5.840e-92
Identity = 166/169 (98.22%), Postives = 169/169 (100.00%), Query Frame = 2 
Query:   38 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT+RLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPF+VVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD+GTISGLNV
Sbjct:    1 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTDRLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 169
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 309.301 bits (791), Expect = 7.646e-84
Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 2 
Query:   38 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            M+KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP  TIFDAKRLIGRKF+DA VQ+DMKHWPF+VVS  GKPKI+V YK E KTFFPEE+SSMVLTKMKETAEAYLGKTV NAVITVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    1 MSKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTQTIFDAKRLIGRKFDDAAVQSDMKHWPFEVVSADGKPKIEVTYKDEKKTFFPEEISSMVLTKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNV 169
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 2.225e-83
Identity = 150/168 (89.29%), Postives = 160/168 (95.24%), Query Frame = 2 
Query:   41 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            A+ PA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRLIGRKFEDATVQ+DMKHWPF VVS+GGKPK++V YKGE KTFFPEE+SSMVLTKMKE AEAYLG  VQ+AVITVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    3 ARGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEISSMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAGTITGLNV 170
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 2.225e-83
Identity = 150/168 (89.29%), Postives = 160/168 (95.24%), Query Frame = 2 
Query:   41 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            A+ PA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRLIGRKFEDATVQ+DMKHWPF VVS+GGKPK++V YKGE KTFFPEE+SSMVLTKMKE AEAYLG  VQ+AVITVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    3 ARGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEISSMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAGTITGLNV 170
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 2.225e-83
Identity = 150/168 (89.29%), Postives = 160/168 (95.24%), Query Frame = 2 
Query:   41 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            A+ PA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRLIGRKFEDATVQ+DMKHWPF VVS+GGKPK++V YKGE KTFFPEE+SSMVLTKMKE AEAYLG  VQ+AVITVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    3 ARGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEIKTFFPEEISSMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAGTITGLNV 170
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 4.956e-83
Identity = 149/168 (88.69%), Postives = 159/168 (94.64%), Query Frame = 2 
Query:   41 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            A+ PA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFDAKRLIGRKFEDATVQ+DMKHWPF VVS+GGKPK++V YKGE KTFFPEE+SSMVLTKMKE AEAYLG  V +AVITVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    3 ARGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNV 170
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 8.453e-83
Identity = 149/168 (88.69%), Postives = 159/168 (94.64%), Query Frame = 2 
Query:   41 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            A+ PA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTIFD KRLIGRKFEDATVQ+DMKHWPF VVS+GGKPK++V YKGE KTFFPEE+SSMVLTKMKE AEAYLG  VQ+AVITVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    3 ARGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDRKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGEMKTFFPEEISSMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAGTITGLNV 170
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.883e-82
Identity = 146/169 (86.39%), Postives = 160/169 (94.67%), Query Frame = 2 
Query:   38 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            M+K PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGR+F+DA VQ+DMKHWPF VV+D G+PK++V YKGE K+F+PEEVSSMVLTKMKE AEAYLGKTV NAV+TVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNV 169
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.883e-82
Identity = 146/169 (86.39%), Postives = 160/169 (94.67%), Query Frame = 2 
Query:   38 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            M+K PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGR+F+DA VQ+DMKHWPF VV+D G+PK++V YKGE K+F+PEEVSSMVLTKMKE AEAYLGKTV NAV+TVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNV 169
[Close]
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.883e-82
Identity = 146/169 (86.39%), Postives = 160/169 (94.67%), Query Frame = 2 
Query:   38 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            M+K PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGR+F+DA VQ+DMKHWPF VV+D G+PK++V YKGE K+F+PEEVSSMVLTKMKE AEAYLGKTV NAV+TVPAYFNDSQRQATKD+GTI+GLNV
Sbjct:    1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNV 169
The following BLAST results are available for this feature:
BLAST of FC878533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7D_MANSE5.840e-9298.22Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP7D_DROME7.646e-8489.94Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP72_RAT2.225e-8389.29Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_CAPHI2.225e-8389.29Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP72_BOVIN2.225e-8389.29Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP72_HUMAN4.956e-8388.69Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]
HSP72_MOUSE8.453e-8388.69Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP7C_SAGOE1.883e-8286.39Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT1.883e-8286.39Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_MOUSE1.883e-8286.39Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP20RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878533 ID=FC878533; Name=FC878533; organism=Citrus clementina; type=EST; length=546bp
CTGATTTTACGACTGAAAATATAGTAAATTATTTAATATGGCCAAGGCAC
CCGCAGTAGGTATCGACTTGGGCACCACTTACTCGTGCGTGGGAGTATTC
CAGCACGGTAAGGTGGAGATCATCGCCAACGACCAGGGCAACAGGACTAC
ACCCTCATATGTAGCCTTCACCGATACGGAGCGTCTCATCGGAGATGCTG
CCAAGAACCAGGTTGCGATGAACCCCAACAACACCATCTTTGATGCCAAA
CGTCTTATTGGACGCAAGTTCGAAGATGCCACAGTCCAAGCTGACATGAA
ACATTGGCCTTTTGATGTCGTAAGTGATGGAGGTAAACCAAAGATCAAGG
TAGCATACAAGGGTGAAGACAAAACATTCTTCCCCGAAGAAGTTAGCTCA
ATGGTACTCACAAAAATGAAGGAAACTGCCGAGGCATACCTTGGCAAAAC
GGTGCAGAATGCAGTAATCACGGTTCCAGCCTATTTCAATGATTCACAGA
GGCAAGCCACAAAAGATTCCGGTACCATCTCTGGCTTAAACGTTTT
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