FC878545

Overview
NameFC878545
Unique NameFC878545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10514 contig Ccv1_Contig10514:4..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GLDH_BRAOL (L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.189e-69
Identity = 130/165 (78.79%), Postives = 145/165 (87.88%), Query Frame = 1
Query:  187 DAEIRKYLGYTALLVFCGAATYYSFPFSEDAKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIVQL 681
            + E RKY GY AL +F GAATY+SFPF E+AKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNF+QPE+          A+EK+ RIRPVGSGLSPNGIGL+R+GMVNLAL+DKVLEVDKEKKRVRVQAGIRVQ LVD I++YGLTLQNFASIREQQIGGI+Q+
Sbjct:   52 EKEFRKYAGYAALALFSGAATYFSFPFPENAKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNFNQPETLADLEALVKEAHEKKNRIRPVGSGLSPNGIGLSRSGMVNLALMDKVLEVDKEKKRVRVQAGIRVQQLVDAIQEYGLTLQNFASIREQQIGGIIQV 216          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GLDH_ARATH (L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=GLDH PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.903e-69
Identity = 128/165 (77.58%), Postives = 143/165 (86.67%), Query Frame = 1
Query:  187 DAEIRKYLGYTALLVFCGAATYYSFPFSEDAKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIVQL 681
            +A+ RKY GY AL +F G ATY+SFPF E+AKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNF+QPE+          ++EK+ RIRPVGSGLSPNGIGL+R+GMVNLAL+DKVLEVDKEKKRV VQAGIRVQ LVD IK YGLTLQNFASIREQQIGGI+Q+
Sbjct:   62 EAQFRKYAGYAALAIFSGVATYFSFPFPENAKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNFNQPENLADLEALVKESHEKKLRIRPVGSGLSPNGIGLSRSGMVNLALMDKVLEVDKEKKRVTVQAGIRVQQLVDAIKDYGLTLQNFASIREQQIGGIIQV 226          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GLDH2_ORYSJ (L-galactono-1,4-lactone dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=GLDH2 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 114/199 (57.29%), Postives = 138/199 (69.35%), Query Frame = 1
Query:   85 SVPLKHHPLPSIRTLXXXXXXXXXXXXXXXXXXXDAEIRKYLGYTALLVFCGAATYYSFPFSEDAKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIVQL 681
            S P  HH L  +R L                   DA++RKY GY  LL+ CGAATYYSFP   DA HKKA  F+YAPLP+DLH VSNWS THEV TR   QP+S          A+ +R ++RP+GSGLSPNG+ L+RAGMVNLAL+DKVL+VD +KK V VQAGIRV  LVD ++++GLTLQNFASIREQQ+GGI+Q+
Sbjct:   15 SSPSSHHHLHLVRALSASSPLPAS----------DADLRKYAGYALLLLGCGAATYYSFPLPPDALHKKAVPFKYAPLPDDLHAVSNWSATHEVHTRVLLQPDSLPVLHDALAAAHGERRKLRPLGSGLSPNGLALSRAGMVNLALMDKVLDVDAKKKTVTVQAGIRVAELVDTLREHGLTLQNFASIREQQVGGIIQV 203          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GLDH1_ORYSJ (L-galactono-1,4-lactone dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=GLDH1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 113/199 (56.78%), Postives = 136/199 (68.34%), Query Frame = 1
Query:   85 SVPLKHHPLPSIRTLXXXXXXXXXXXXXXXXXXXDAEIRKYLGYTALLVFCGAATYYSFPFSEDAKHKKAQIFRYAPLPEDLHTVSNWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIVQL 681
            S P  HH L  +R L                   DA++RKY GY  LL+ CGAATYYSFP   DA HKKA  F+YAPLP+DLH VSNWS THEV TR   QP+S          A+ +  ++RP+GSGLSPNG+ L+RAGMVNLAL+DKVL VD +KK V VQAGIRV  LVD ++++GLTLQNFASIREQQ+GGI+Q+
Sbjct:   15 SSPSSHHHLHLVRALSASSPLPAS----------DADLRKYAGYALLLLGCGAATYYSFPLPPDALHKKAVPFKYAPLPDDLHAVSNWSATHEVHTRVLLQPDSLPALHDALAAAHGECRKLRPLGSGLSPNGLALSRAGMVNLALMDKVLGVDAKKKTVTVQAGIRVAELVDALREHGLTLQNFASIREQQVGGIIQV 203          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GGLO_MOUSE (L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.427e-14
Identity = 40/142 (28.17%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  343 NWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIV-QLEYLEGFKRSTKLDMILAISVFKGKETKL 765
            NW+ T+      ++QP S          A ++  +++ VG G SP+ I      M+++  +++VL+VDKEKK+V V+AGI +  L  ++ ++GL L N  ++ +  +GG++    +  G K       ++A+++ K   T L
Sbjct:   12 NWAKTYGCSPEMYYQPTSVGEVREVLALARQQNKKVKVVGGGHSPSDIACTDGFMIHMGKMNRVLQVDKEKKQVTVEAGILLTDLHPQLDKHGLALSNLGAVSDVTVGGVIGSGTHNTGIKHGILATQVVALTLMKADGTVL 153          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GGLO_RAT (L-gulonolactone oxidase OS=Rattus norvegicus GN=Gulo PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 32/111 (28.83%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  343 NWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIV 675
            NW+ T+      ++QP S          A E++ +++ VG G SP+ I      M+++  +++VL+VDKEKK++ V+AGI +  L  ++ ++GL + N  ++ +  + G++
Sbjct:   12 NWAKTYGCSPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACTDGFMIHMGKMNRVLQVDKEKKQITVEAGILLADLHPQLDEHGLAMSNLGAVSDVTVAGVI 122          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GGLO_PIG (L-gulonolactone oxidase OS=Sus scrofa GN=GULO PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 34/111 (30.63%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  343 NWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIV 675
            NW+ T+      ++QP S          A ++  R++ VG G SP+ I      M+++  +++VL+VD EKK+V V+AGI +  L  ++ ++GL L N  ++ +   GG++
Sbjct:   12 NWAKTYGCCPEMYYQPTSVEEIREVLALARQQNKRVKVVGGGHSPSDIACTDGFMIHMGKMNRVLKVDMEKKQVTVEAGILLADLHPQLDKHGLALSNLGAVSDVTAGGVI 122          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GGLO_BOVIN (L-gulonolactone oxidase OS=Bos taurus GN=GULO PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 39/142 (27.46%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  343 NWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIV-QLEYLEGFKRSTKLDMILAISVFKGKETKL 765
            NW+ T+      + QP S          A ++  R++ VG G SP+ I      M+++  +++VL+VD EKK+V V+AGI +  L  ++ ++GL L N  ++ +   GG++    +  G K       ++A+++     T L
Sbjct:   12 NWARTYGCCPEMYFQPTSVEEVREVLALARQQNKRVKVVGGGHSPSDIACTDGFMIHMGKMNRVLKVDTEKKQVTVEAGILLADLHPQLDKHGLALSNLGAVSDVTAGGVIGSGTHNTGIKHGILATQVVALTLLTANGTIL 153          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: GGLO_SCYTO (L-gulonolactone oxidase OS=Scyliorhinus torazame GN=GULO PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 32/111 (28.83%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  343 NWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIV 675
            NW+ T+  +   + +P +          AN++  R++ VG G SP+ I      +V L  L+++L+VDKE+K +  +AGI +  L +++   GL L N  ++ +  +GG++
Sbjct:   12 NWATTYSCEPELYFEPTTVEEIRQILELANQRNKRVKVVGCGHSPSDIACTDNYLVRLNKLNRILQVDKERKWITAEAGILLSDLNEKLDALGLALSNIGAVSDVALGGVI 122          
BLAST of FC878545 vs. ExPASy Swiss-Prot
Match: ALO_NEUCR (Putative D-arabinono-1,4-lactone oxidase OS=Neurospora crassa GN=alo-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 42/115 (36.52%), Postives = 55/115 (47.83%), Query Frame = 1
Query:  331 HTVSNWSGTHEVQTRNFHQPESXXXXXXXXXXANEKRARIRPVGSGLSPNGIGLARAGMVNLALLDKVLEVDKEKKRVRVQAGIRVQGLVDEIKQYGLTLQNFASIREQQIGGIV 675
            H    W+GT       + QPES          A   R R+   G G SP+ I    + +VNL   +KV+ VD     V VQAGIR+  L DE+ + GL L +  SI EQ I G +
Sbjct:   38 HVHRTWAGTFTSLPELYIQPESVSEIQKVVRLARHARRRVTTTGCGHSPSDITCTSSWLVNLDNFNKVISVDHLTGLVVVQAGIRLYQLSDELDRRGLALPSLGSINEQSIAGAI 152          
The following BLAST results are available for this feature:
BLAST of FC878545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GLDH_BRAOL1.189e-6978.79L-galactono-1,4-lactone dehydrogenase, mitochondri... [more]
GLDH_ARATH5.903e-6977.58L-galactono-1,4-lactone dehydrogenase, mitochondri... [more]
GLDH2_ORYSJ8.842e-5757.29L-galactono-1,4-lactone dehydrogenase 2, mitochond... [more]
GLDH1_ORYSJ2.178e-5556.78L-galactono-1,4-lactone dehydrogenase 1, mitochond... [more]
GGLO_MOUSE5.427e-1428.17L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE... [more]
GGLO_RAT1.337e-1228.83L-gulonolactone oxidase OS=Rattus norvegicus GN=Gu... [more]
GGLO_PIG8.664e-1230.63L-gulonolactone oxidase OS=Sus scrofa GN=GULO PE=2... [more]
GGLO_BOVIN1.132e-1127.46L-gulonolactone oxidase OS=Bos taurus GN=GULO PE=2... [more]
GGLO_SCYTO3.292e-1128.83L-gulonolactone oxidase OS=Scyliorhinus torazame G... [more]
ALO_NEUCR4.300e-1136.52Putative D-arabinono-1,4-lactone oxidase OS=Neuros... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA85CD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878545 ID=FC878545; Name=FC878545; organism=Citrus clementina; type=EST; length=888bp
CACTGAATAGTTAAAAAGATGCAGAGAGCTCTCTCCATCAGACGCACTCT
CCAATCCCTTCATCACCGCCTCCTCTTCAACAAATCGGTCCCATTGAAAC
ACCACCCATTACCTTCAATCCGTACGCTCTCATCAACACCATCTGCATCA
CCATCACCATCACCATCACCATCACCATCACCGTCTGATGCTGAAATCCG
TAAGTATCTGGGCTACACTGCTCTCCTCGTATTCTGCGGCGCCGCCACAT
ACTATTCCTTCCCATTCTCCGAAGACGCCAAGCACAAGAAGGCCCAGATC
TTCCGTTATGCCCCGTTACCCGAAGACCTCCACACTGTGTCCAACTGGAG
CGGGACCCACGAGGTGCAGACTCGGAACTTCCATCAGCCCGAGAGCGTTG
AGGAGCTTGAGAAGTTAGTTAAGGAAGCCAATGAGAAGCGGGCCAGGATC
CGGCCCGTCGGTTCCGGGCTGTCCCCCAATGGCATTGGGCTCGCCCGCGC
TGGGATGGTGAATCTGGCGCTCTTGGATAAGGTTTTGGAAGTTGATAAGG
AGAAGAAGAGAGTGAGAGTGCAGGCTGGTATTAGAGTTCAGGGTTTGGTC
GATGAGATTAAACAATATGGCCTTACCCTTCAGAACTTTGCTTCTATTCG
AGAGCAACAAATTGGTGGCATTGTTCAGTTGGAGTATCTAGAAGGCTTCA
AGCGCAGCACAAAACTGGATATGATACTTGCCATTTCTGTTTTTAAAGGA
AAAGAAACAAAACTCCACATTGAGCTGAGAATTATCGATTATATGATGTG
AGCCAGTGTTTTATTTTATTTATTTTTTTTATCCTCTGATTATTATTTTC
TGTCTATTGGTTGTTAGGTTGGTGCACATGGTACAGGT
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