FC878566

Overview
NameFC878566
Unique NameFC878566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length845
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4214 contig Ccv1_Contig4214:2..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.180e-61
Identity = 122/218 (55.96%), Postives = 144/218 (66.06%), Query Frame = 3
Query:  219 APSLFTNI-------IDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVAST-ARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA 845
            A +LFT +       ID P  PSVDPKHV + NFAPV DEL PT+C ++ G LP SL G YIRNGPNPQ +PRGP H F+GDGMLH++++  G+A   SRYVKTYKY +E+  G  + PNVFSGF G+   V   A T ARVL G  N   G GLANT            GESDLPY ++ T  GDIET+GR+DFD +L  SMTAHPKTD  T ETFA
Sbjct:   82 ATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFA 299          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 82/199 (41.21%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  249 RPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA 845
            +PL  +VDP+H  +GN+APV E        VDGK+PD + G Y+RNG NP   P    H F+GDGM+H+++++ G A YS R+ +T +   E+  G  IFP      +G   + + +   AR L G +N K G G+AN              E DLPY ++ T  GD+ET+GR+DFD +L ++M AHPK D  TKE FA
Sbjct:  101 KPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFA 299          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.589e-36
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 3
Query:  225 SLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA 845
            +L ++  D PL  + DP+    GN++PV E        V+G +PD + G YIRNG NP   P    H F+GDGM+H+++++ G A Y+ R+ KT +   E+  G  +FP      +G   + + +   AR L G +N + G G+AN              E DLPY +K T+ GD++T+GR+DFD +L ++M AHPK D  TKE  A
Sbjct:   86 ALISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAMIAHPKLDPVTKELHA 292          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 78/198 (39.39%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  252 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA 845
            PL  + DP     GNFAPV+E        V GKLPDS+ G Y+RNG NP H P    HFF+GDGM+H+++   G A Y+ R+ +T ++  ER  G  +FP      +G   + + +   AR   G V+   G G+AN              E DLPY ++ T  GD++T+GR+DFD +L ++M AHPK D  + E FA
Sbjct:  112 PLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFA 309          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 84/255 (32.94%), Postives = 125/255 (49.02%), Query Frame = 3
Query:  126 QNIPFRSSQKPKICAPIQSLMGTNSSYNTKSAPSLFTNII------------DRPLHP---SVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA 845
            Q+  F+     K+C  + +L+   ++ N K  P   T  +            +R  HP   + DP     GNF PV E        V G +P+ + G Y+RNG NP H P    H F+GDGM+H+++   G   Y+ R+ +T +   ER+ G  +FP      +G + + + +    R L G V+   G G+AN              E DLPY +K T+ GD+ET GR+DFD +L ++M AHPK D  T+E FA
Sbjct:  115 QSPTFKPPSWKKLCNDVTNLIPKTTNQNPKLNPVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKIDPETRELFA 369          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.314e-34
Identity = 84/212 (39.62%), Postives = 114/212 (53.77%), Query Frame = 3
Query:  216 SAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETF 842
            SA  L    +    H    P H  +GNFAPV DE  P     V G LP+ L G ++R GPNP+ MP    H+F+GDGM+H M++  G+A Y+SRYVKT + K E    G  F  +    GF+GL  MVQ     A++ +  +++  G G  NT             E+D PY++K   +GD++TLG  D+D+ L  S TAHPK D  T E F
Sbjct:   29 SAVDLIEKAVVYLFHDKSKPCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLF-MVQMQLLRAKLKV--IDVSYGVGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLSHSFTAHPKVDPFTDEMF 237          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.664e-33
Identity = 83/214 (38.79%), Postives = 115/214 (53.74%), Query Frame = 3
Query:  210 TKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETF 842
            T  A  L   II +  + S  P H  +GNFAPV DE  P +   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+VKT ++K E    G  F  +    G +GL+ MV      A++ +  +++  G G ANT             E D PY IK   +GD++TLG  D+D+ L  + TAHPK D  T E F
Sbjct:   23 TSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLL-MVNMQMLRAKLKI--LDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMF 233          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.785e-33
Identity = 86/252 (34.13%), Postives = 123/252 (48.81%), Query Frame = 3
Query:  135 PFRSSQKPKICAPIQSLMGTNSSY-NTKSAPSLFTNIID-------------RPLHPSVDPKHVFTGNFAPVDELGPTECPV-----VDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAI-YSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTT 830
            PF+    P + +P+ S +    +Y N      L   ++D             RPL    DP    +GNFAPV+E     CPV     V G++P  L G YIRNG NP   P    H F+GDGM+H++ +     + YS RY KT +   E   G  +FP      +G   + +    TAR  +G V+  +G G+AN              E DLPY +K   +GD+ET+GR+ FD+++ +S+ AHPK D TT
Sbjct:   37 PFKIPTLPDLTSPVPSPVKLKPTYPNLNLLQKLAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPVNE-----CPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDATT 283          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.375e-32
Identity = 70/190 (36.84%), Postives = 103/190 (54.21%), Query Frame = 3
Query:  252 PLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTD 821
            PL  + DPK    GNFAPV E    +   V GK+P  + G Y+RNG NP + P    HFF+GDGM+H+++ + G A Y+ R+ +T +   E+  G  +FP      +G   + + +   AR L   V+   G G+AN              E DLPY ++ T  GD+ T+GR+DF+ +L ++M AHPK D
Sbjct:  131 PLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQLNSTMIAHPKLD 320          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.101e-32
Identity = 77/206 (37.38%), Postives = 108/206 (52.43%), Query Frame = 3
Query:  228 LFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA 845
            L   ++ + L+ S  P H  TGNF PV E  PT+   V G LPD L G ++R GPNP+  P    H+F+GDGM+H +++  G+A Y SR+V+T + K E   G   F  +     GL  ++       R  +  ++L  G G  NT             E+D PY IK   +GD++TLG  D+D+ L  S TAHPK D  T E F+
Sbjct:   32 LLEKLLVKFLYDSSLPHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKI-GDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFS 236          
The following BLAST results are available for this feature:
BLAST of FC878566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD4_ARATH3.180e-6155.96Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED5_ARATH4.041e-4041.21Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED2_ARATH1.589e-3637.209-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED3_ARATH7.887e-3639.399-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED9_ARATH6.677e-3532.949-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
CCD_CROSA3.314e-3439.62Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PEA3.664e-3338.79Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
NCED6_ARATH4.785e-3334.139-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
NCED1_PHAVU2.375e-3236.849-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
CCD1_PHAVU3.101e-3237.38Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CC01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878566 ID=FC878566; Name=FC878566; organism=Citrus clementina; type=EST; length=845bp
AAAAAAAACATCATCCACTCTACATATCTACCAAAAGAATGGATCTCATG
AATTACTTATCCTTAAAGATATCATACAATTCTCCACCAAAACCAAAGTT
CACATATTACAATCACATCAACGAACAAAATATCCCATTCCGTTCTTCTC
AAAAGCCAAAAATATGTGCACCCATACAATCTTTAATGGGAACAAATTCA
TCCTACAACACCAAATCCGCGCCATCATTGTTTACAAACATTATTGATCG
TCCTCTTCATCCTTCTGTTGATCCAAAGCATGTCTTCACCGGAAACTTTG
CTCCGGTGGACGAGCTTGGCCCGACTGAGTGCCCGGTGGTTGATGGCAAG
CTTCCGGACTCTCTAACCGGCACGTACATCCGAAACGGACCAAACCCACA
GCACATGCCCCGTGGCCCTCTCCACTTCTTTGAAGGTGATGGCATGCTTC
ACTCAATGCAATTATCTAAAGGGCGTGCAATTTACAGTAGCCGCTATGTC
AAGACTTACAAGTACAAGCTCGAGAGAGATGCCGGTGGCCAAATTTTCCC
CAACGTCTTCTCAGGATTTTATGGGCTTGTGGATATGGTTCAATGTGTTG
CATCGACAGCAAGAGTGTTGATGGGTCACGTAAATCTCAAGAAAGGATTT
GGTTTGGCCAATACAAGTCTTGCTTTCTTTTCGTCTAAGCTTCTTGCTCT
TGGTGAGTCCGATTTGCCCTACATTATAAAATGTACTCGAGAAGGCGACA
TTGAGACTTTAGGGAGATGGGATTTTGATGAAGAATTATTTGCAAGCATG
ACTGCGCATCCTAAGACAGACATGACCACAAAGGAGACTTTTGCT
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