FC878571

Overview
NameFC878571
Unique NameFC878571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length848
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878571_ssr435 microsatellite FC878571_ssr435:435..444. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878571_ssr407 microsatellite FC878571_ssr407:407..421. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13960 contig Ccv1_Contig13960:3..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878571 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 8.732e-51
Identity = 120/241 (49.79%), Postives = 144/241 (59.75%), Query Frame = 2 
Query:  134 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTE-LEXXXXXXXXXXXXXXXXXAITGDGSVSNGKQGGSSIFL--APQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 847
            M V++M  PK  MEDQTAIQEAA+QG+KSMEHLIR++S+     +VDCS++TD TVSKFKKVISLLNR+GHARFRRGPVH                  +S                      S+VQ+   S+TLDFT+PS+F    KS+E +E                 AITGDGSVS     GSSIFL  AP  P  S+GKPPL+  PY+KRC +H DHS+  SGK SG  SGN KCHC
Sbjct:    1 MTVDIMRLPK--MEDQTAIQEAASQGLKSMEHLIRVLSNRPEERNVDCSEITDFTVSKFKKVISLLNRSGHARFRRGPVHSPP---------------SSSVPPPVKVTTPAPTQISAPAPVSFVQANQQSVTLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSK----GSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEH-DHSEGFSGKISG--SGNGKCHC 217
[Close]
BLAST of FC878571 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.394e-48
Identity = 118/241 (48.96%), Postives = 138/241 (57.26%), Query Frame = 2 
Query:  134 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTELEXXXXXXXXXXXXXXXXXAITGDGSVSNGKQGGSSIFL--APQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 847
            MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKFK VISLLNRTGHARFRRGPVH                                            +   P S+TLDF+KPS+F    KS ELE                 AITGDGSVSNGK     IFL  AP  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC
Sbjct:    1 MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNRTGHARFRRGPVH-----------STSSAASQKLQSQIVKNTQPEAPIVRTTTNHPQIVPPPSSVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNGK-----IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHC 220
The following BLAST results are available for this feature:
BLAST of FC878571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK17_ARATH8.732e-5149.79Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK11_ARATH1.394e-4848.96Probable WRKY transcription factor 11 OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA13DF06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878571 ID=FC878571; Name=FC878571; organism=Citrus clementina; type=EST; length=848bp
AAGATAGAGAGCCTCCACCCTCGCAGCCTCAGCCTTAAGTTTTACTTTTT
CAAAGGGTTTCGTCGAATGACATCTTGAGGCTTTTCCAAATTGCTCTCAT
TTGGTAGCAGAAACTTTTTCGTTTTTCCAAATCATGGCGGTGGAGCTGAT
GGGATTTCCAAAAAGGATGATGGAAGATCAGACGGCGATACAAGAAGCTG
CAACGCAAGGGATCAAAAGCATGGAGCACCTGATCCGTCTCATGTCTCAT
CACCAATCCTCGAATCACGTTGACTGCTCGGACCTCACCGATCTCACCGT
CTCTAAGTTCAAAAAAGTCATTTCCCTGCTCAACCGAACCGGTCACGCCC
GGTTCAGGCGCGGGCCGGTTCACTCTTCGCCTTCATCTTCATCTGCATCT
GCGCCAGCCGCCGCCGCCGCCTCAGGCAACTCTCCACACACACAGACCTT
AACTCTTACTCCGCCTGCTCCTACGATGGCTGTCGCTCCCTCTACGGCGA
GTTACGTCCAGTCACAGCCGCACAGTCTGACTCTTGATTTTACAAAACCT
AGTTTGTTTAGCGGAAACGTCAAGAGCACTGAGCTCGAGTTTTCCAAAGA
CAGCTTCTGTGTGTCGTCGAACTCGTCCTTCATGTCCTCTGCTATCACCG
GAGACGGTAGCGTTTCGAACGGGAAGCAAGGAGGATCTTCGATCTTCTTG
GCGCCACAAGCTCCTGCTGTTTCCGCTGGAAAGCCGCCGCTCGCGGCTCA
GCCTTACAAGAAGAGGTGTCAAGATCATAAAGATCATTCCGATGATCTTT
CCGGCAAGTTCTCGGGCTCCACCTCTGGCAACAACAAGTGTCACTGCT
back to top