FC878595

Overview
NameFC878595
Unique NameFC878595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15521 contig Ccv1_Contig15521:33..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878595 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.126e-63
Identity = 127/211 (60.19%), Postives = 152/211 (72.04%), Query Frame = 3 
Query:   84 KVKITSKTHVKPSK-VIGRRECQLVTFDLPYLFFYYNQKLLLYRNG---DREF----HDAVEKLKDGLKHVLEEFYQLAGKLGKDEEGVFRVEYXXXXXXXXXXXXXXXXXXXXX---LTAEEGTKSFKELIPYYGVLNLEGTHRPLLALQLTKLKDGMVIGCAFNHAILDGTSTWHFMSSWAQACNGATSVSVPPFLERTKSRNTRVKLD 683
            K+KI SKTHVKP+K V+G+++  L TFDLPYL FYYNQK LLY+     D E     ++ VE LKDGL  VLE+FYQLAGKL KD+EGVFRVEY                        LTAE+GT  FKEL+PY G+LNLEG  RPLLA+Q+TKLKDG+ +G AFNHA+LDGTSTWHFMSSWA+ C GA S+S  PFL+R+K+R+TRVKLD
Sbjct:    2 KIKIMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQNEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAEDGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICRGAQSISTQPFLDRSKARDTRVKLD 212
The following BLAST results are available for this feature:
BLAST of FC878595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DCR_ARATH4.126e-6360.19BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF12RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878595 ID=FC878595; Name=FC878595; organism=Citrus clementina; type=EST; length=690bp
CTTCCACTATTTCATCCAACAAAAACAAATCAAAAGTGCTTTTGACAATC
ATAACCCTAATATTAGAAATGGCAGAGATAACAAAGGTGAAGATTACAAG
CAAAACCCATGTGAAGCCGAGCAAAGTGATAGGAAGAAGAGAGTGTCAGC
TGGTGACTTTTGATCTGCCGTATCTGTTTTTTTATTACAACCAGAAGCTG
TTGTTGTATAGAAACGGGGACCGTGAGTTTCACGACGCTGTCGAGAAACT
CAAAGATGGGCTTAAGCATGTGTTGGAGGAGTTTTATCAGCTGGCTGGGA
AGCTGGGGAAAGATGAAGAAGGTGTCTTTAGGGTTGAGTATGATGATGAC
ATGGACGGCGTCGAGGTGGCCGAGGCCGTCGCTGATGAGATCGCCGTCGA
TGATCTGACGGCTGAGGAAGGCACCAAGAGTTTCAAGGAGTTGATTCCCT
ATTATGGAGTCCTGAATTTGGAGGGGACTCATCGGCCTTTGTTGGCTCTT
CAGTTGACCAAGCTGAAAGACGGAATGGTAATTGGATGCGCGTTCAATCA
CGCGATCCTAGACGGCACCTCCACGTGGCACTTCATGAGCTCATGGGCCC
AGGCGTGCAACGGGGCCACCTCGGTCTCGGTCCCACCTTTCCTGGAGCGC
ACCAAATCCCGCAACACGCGCGTGAAGCTCGACCCCTCAC
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