FC878605

Overview
NameFC878605
Unique NameFC878605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length773
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:153..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB_ARATH (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.640e-114
Identity = 200/245 (81.63%), Postives = 230/245 (93.88%), Query Frame = 2
Query:   38 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            +RGL+NKLVSRSL+++G+WQ QQLRRLNIHEYQGAELM KYG+NVPKG+A +S++EVKKAIQD FP+  ELVVKSQILAGGRGLGTFKSGLKGGVHIVK++E E++AGKMLGQ+LVTKQTGPQGK+VSKVYLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+KVPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LEINPLAETS  QLVA
Sbjct:    1 MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKAIQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQTGPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIKVPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETSTNQLVA 245          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB_ORYSJ (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.467e-112
Identity = 200/246 (81.30%), Postives = 220/246 (89.43%), Query Frame = 2
Query:   35 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            MVRG L KL SR+L+VAG+WQ QQLRRLNIHEYQGAELM KYGINVP+G A  SV+EVK  +++ FP  KE+VVKSQILAGGRGLGTFKSGL+GGVHIVK EE E LA KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI LDR TAGP+II CSKGGTSIEDLAEKYP+MI+KVPIDVF GITD+DAAKVVDGLAPK ADR  +IEQ+KKLY+LFC+SDCTLLEINPLAET+  +LVA
Sbjct:    1 MVRGSLGKLASRALSVAGKWQHQQLRRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGGRGLGTFKSGLQGGVHIVKAEEAESLAAKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKGITDDDAAKVVDGLAPKTADRQSSIEQIKKLYELFCKSDCTLLEINPLAETADNKLVA 246          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB1_DICDI (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.152e-49
Identity = 102/218 (46.79%), Postives = 142/218 (65.14%), Query Frame = 2
Query:  104 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 754
            Q R LN+HEYQ  ++M  YGIN P G    + +E +K  +    + ++LVVK+Q+LAGGRG G F SGLKGGV +    E+V+  A KMLG  LVTKQTG  GK+V +VY+ E+  L  EMYFAI++DRK  GP+++   +GG  IE +A   P+ I K PID+  G+  E   ++ + L     + + A +Q+KKLY  F ++DCTL+EINPLAET+
Sbjct:   31 QKRFLNVHEYQAQKMMKSYGINCPVGNVAETPEEAEKIAE--VMNTQDLVVKAQVLAGGRGKGIFTSGLKGGVQLCSSAEDVKKFASKMLGHTLVTKQTGEDGKVVHQVYVTERHFLRKEMYFAILMDRKAGGPVMVASPEGGVDIEGVARDNPSAIFKEPIDIMIGVQPEQTKRLAEKLGFSKKNISMAQDQMKKLYDFFIKNDCTLVEINPLAETA 246          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB1_PIG (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.259e-47
Identity = 102/225 (45.33%), Postives = 145/225 (64.44%), Query Frame = 2
Query:   89 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 754
            Q QQQQ R L++HEY   EL+ + G+++PKG    S DE     +      K++V+K+Q+LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG S+GG +IED+A + P  IVK PID+  GI  E A ++    G  P + D   A E + KLY LF + D T++EINP+ E S
Sbjct:    6 QIQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKL--GSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDS 226          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB1_MOUSE (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.121e-46
Identity = 105/230 (45.65%), Postives = 146/230 (63.48%), Query Frame = 2
Query:   89 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS-GKQL 766
            Q QQQQ R L++HEY   EL+ + G++VPKG    S DE     +      K++V+K+Q+LAGGRG GTF SGLKGGV IV   EE + ++ +M+GQ L+TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG ++GG +IED+A + P  IVK PID+  GI  E A  +    G    + D   A E + KLY LF + D T++EINP+ E S GK L
Sbjct:   44 QVQQQQQRTLSLHEYLSMELLQEAGVSVPKGFVAKSSDEAYAIAKKL--GSKDVVIKAQVLAGGRGKGTFTSGLKGGVKIVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQKMGFPSNIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVL 269          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB1_HUMAN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.121e-46
Identity = 101/225 (44.89%), Postives = 144/225 (64.00%), Query Frame = 2
Query:   89 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 754
            Q QQQQ R L++HEY   EL+ + G++VPKG    S DE     +      K++V+K+Q+LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG S GG +IED+A + P  I+K PID+  GI  E A ++    G  P + +   A E + KLY LF + D T++EINP+ E S
Sbjct:   44 QVQQQQQRNLSLHEYMSMELLQEAGVSVPKGYVAKSPDEAYAIAKKL--GSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVE--SAAENMVKLYSLFLKYDATMIEINPMVEDS 264          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Neurospora crassa GN=B9J10.140 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.464e-46
Identity = 100/226 (44.25%), Postives = 145/226 (64.16%), Query Frame = 2
Query:   98 QQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            QQQ R L+IHEY  A+L+ +YGI VPKG  VA      +AI       +++V+K+Q+LAGGRG GTF +GLKGGV ++    E +  A +M+G  L+TKQTG QG++ S VY+CE+     E Y A+++DR + GP+I+  S+GG  IE +A++ P  I    ID+  G+TDE A  +   L        +A + ++KLYK+FCE D T +EINPL+ETS  +++A
Sbjct:   31 QQQRRALSIHEYLSADLLRQYGIGVPKG-DVARTGAEAEAIAKQIGG-EDMVIKAQVLAGGRGKGTFDNGLKGGVRVIYSPTEAKMFAEQMIGHKLITKQTGAQGRLCSAVYICERKFARREFYLAVLMDRASQGPVIVSSSQGGMDIEGVAKENPEAIHTTYIDINVGVTDEMARDIATKLGFSEQCVEEAKDTIQKLYKIFCEKDATQIEINPLSETSDHKVMA 254          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB1_MACFA (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Macaca fascicularis GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.261e-46
Identity = 99/225 (44.00%), Postives = 144/225 (64.00%), Query Frame = 2
Query:   89 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 754
            Q QQQQ R L++HEY   EL+ + G+++PKG    S DE     +      K++V+K+Q+LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG S+GG +IED+A + P  I+  PID+  GI  E A ++    G  P + +   A E + KLY LF + D T++EINP+ E S
Sbjct:   44 QVQQQQQRNLSLHEYMSMELLQEAGVSIPKGCVAKSPDEAYAVAKKL--GSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIITEPIDIEEGIKKEQALQLAQKMGFPPNIVE--SAAENMVKLYSLFLKYDATMIEINPMVEDS 264          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB1_BOVIN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.151e-45
Identity = 97/223 (43.50%), Postives = 141/223 (63.23%), Query Frame = 2
Query:   89 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 754
            Q Q QQ R L++HEY   EL+ + G+++PKG    S DE     +      K++V+K+Q+LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG S GG +IED+A + P  IVK PID+  GI  E A ++   +    +  + A E + KLY  F + D T++EINP+ E S
Sbjct:   44 QIQHQQQRNLSLHEYLSMELLQEAGVSIPKGHVAKSPDEAYAIAKKL--GSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPASIVDSAAENMIKLYDPFLKYDATMVEINPMVEDS 264          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_AKKM8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=sucC PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.987e-44
Identity = 95/220 (43.18%), Postives = 137/220 (62.27%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            +NIHEYQ  +L  ++G+  PKG+A ++  E  +  ++      + VVK+Q+ AGGRG GTFK+G KGGVH+VK  EEVE++AGKML Q+LVTKQTG  GK+VSK+ + E + L  E YFAI+ DR    P+I+  ++GG  IE++A   P  I++  I+   GI    A K+   L         A + +  +YKLF   DC+L+EINPL  T+  ++ A
Sbjct:    1 MNIHEYQAKQLFERFGVATPKGIAASTAQEAAQTARNM--GLSQYVVKAQVHAGGRGKGTFKNGFKGGVHVVKSVEEVEEVAGKMLNQVLVTKQTGEAGKLVSKIMVAEAVDLKKECYFAILQDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPALGILPFQALKIAVALELTGPLLRQATKLITNVYKLFTALDCSLVEINPLVVTTDDRVCA 218          
The following BLAST results are available for this feature:
BLAST of FC878605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCB_ARATH1.640e-11481.63Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB_ORYSJ4.467e-11281.30Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB1_DICDI3.152e-4946.79Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_PIG2.259e-4745.33Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_MOUSE1.121e-4645.65Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_HUMAN1.121e-4644.89Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB_NEUCR1.464e-4644.25Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCB1_MACFA3.261e-4644.00Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_BOVIN6.151e-4543.50Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCC_AKKM83.987e-4443.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878605 ID=FC878605; Name=FC878605; organism=Citrus clementina; type=EST; length=773bp
CATCTATCTAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATTGT
TAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGCAA
CAGCAGCTCCGCCGTCTCAACATCCACGAATATCAGGGGGCTGAGTTGAT
GGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGTTG
ATGAAGTCAAAAAGGCTATTCAGGATGCTTTTCCCGATCATAAGGAGCTG
GTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTTAA
GTCTGGTCTTAAGGGTGGGGTTCACATCGTTAAGAAAGAAGAAGTTGAAG
ATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTGGT
CCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCACT
TGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCC
CTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCT
GAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAATGG
AATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCACCCAAGG
TTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAACTC
TTTTGTGAGAGTGACTGCACATTATTGGAAATCAATCCTCTAGCAGAGAC
TTCTGGTAAGCAGTTGGTGGCTG
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