FC878614

Overview
NameFC878614
Unique NameFC878614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10477 contig Ccv1_Contig10477:299..1110. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.932e-50
Identity = 101/189 (53.44%), Postives = 133/189 (70.37%), Query Frame = 1
Query:  241 EMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            +++SK+G+ YG+ GNNLPSP +S+   IKS+KA  VK+YDA+P+ L  L  T++ V+I VPN              D+WVRTN+LPY P T+IR++LVGNEILS    ++  NLVPAMRKI  SL+  G   IKVGTP AMD L+SSFPPSNGTFR +I+  VM P+L FLN T S+FF++ + +F WS
Sbjct:   37 DLASKIGINYGRRGNNLPSPYQSINF-IKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIA-DEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGIHNIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWS 223          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.269e-35
Identity = 82/187 (43.85%), Postives = 121/187 (64.71%), Query Frame = 1
Query:  247 SSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            ++ +GV YGQ+G+NLPSP + + L IKS+ AT+VK+YDANP+ILKA  NT I+  I + NE               W++ NV P+LP T I  + +GNEIL+L D S+  NL+PAM+ +  +L T G + +I V T  ++ +L+SSFPPS G F+ D+ +S + P+L F  +T S F ++AY FF +
Sbjct:   26 TTSIGVNYGQIGDNLPSPTDVIPL-IKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKMKDPSKALT--WIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLDS-LTPILEFHRKTDSPFLINAYPFFAY 208          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.775e-29
Identity = 78/207 (37.68%), Postives = 118/207 (57.00%), Query Frame = 1
Query:  187 VVAHLLLASVMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGA-RKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            +V  + ++ + F + G   M+SK+G+CYG+  +NLPSP    EL I+ L    V+IYDAN  +LKA  NT I++ I VPN              D W+  N+LPY P TKI  + VG E+   PD +    ++PAMR I  +LK  G  +KIK+ +  ++ +L  SFPPS+ +F S    + ++PML FL   +S F +D Y ++ +
Sbjct:    7 LVFWIFVSILAFLNFG---MASKIGICYGRNADNLPSPNRVSEL-IQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNV-DTWLSNNILPYYPSTKITSISVGLEVTEAPDNAT-GLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASF-SKKHSAFLKPMLEFLVENESPFMIDLYPYYAY 206          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.164e-29
Identity = 74/185 (40.00%), Postives = 108/185 (58.38%), Query Frame = 1
Query:  253 KVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            KVGVCYG+  ++LP+P + V+L I+      V+IYD N ++LKA  NT I++ I VPN              D W++ +VLPY P TKI Y+ VG E    P  +    +VPAM+ +  +L+ +G +R+IKV T  ++ +L  SFPPS G F S  +   +RPML FL   KS F +D Y ++ +
Sbjct:   25 KVGVCYGRSADDLPTPSKVVQL-IQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNV-DTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYA-YFLRPMLEFLAENKSPFMIDLYPYYAY 206          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.272e-27
Identity = 65/198 (32.83%), Postives = 117/198 (59.09%), Query Frame = 1
Query:  214 VMFFSIGSAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARK-IKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            ++F ++        VG+ YGQ+ NNLPSP   V ++++SL  TRVK+YDA+P +L +  N+ +   I + NE             D W++  + P++  T+I  ++VGNEI    D  +  +L+PAM+ +  +L  LG  K + V +  ++D+L +S+PPS+G+F+ +  +  ++P+L F ++ +S F ++AY FF +
Sbjct:   15 LLFLTLSERIKGQGVGINYGQIANNLPSPAR-VAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQD-WLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQ-YLQPLLDFHSQIESPFLINAYPFFAY 209          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.834e-27
Identity = 71/186 (38.17%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  256 VGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWSS 810
            +GV YGQ+ +NLP P E+V+L+ +S    +V++Y A+P I+KAL  T + + I   N               QW+ +NVLP+ P +KI  + VGNEIL   D ++   L+PAM+ ++K+L+ +    KIKV T ++M VL SS PPS+G+F +   ++ ++ +L FL+ T S F ++ Y FF + S
Sbjct:   26 IGVNYGQVADNLPPPSETVKLL-QSTSIQKVRLYGADPAIIKALAGTGVGIVIGAAN-GDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAGY-QTGLKGILQFLSDTGSPFAINPYPFFAYQS 208          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 4.834e-27
Identity = 75/214 (35.05%), Postives = 122/214 (57.01%), Query Frame = 1
Query:  178 MGLVVAHLLLASVMFFSIGSAEM--SSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLP-DKSIWPNLVPAMRKIRKSLKTLGAR-KIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWS 807
            + L +A ++L  ++   + S E+  +  VGVCYG LGNNLP   + V+L  KS    R+++YD N   L+AL+ ++I+V + VPN              + WV+ NV  + P  K RY+ VGNE+  +    S+   L+PAMR IR ++ + G +  IKV +   M ++ +SFPPS G+FR+D+  S + P++ F+ R  S   V+ Y +F ++
Sbjct:    8 IALQMAAIILLGLL---VSSTEIVGAQSVGVCYGMLGNNLPPASQVVQLY-KSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNS-DLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRNDV-RSFIDPIIGFVRRINSPLLVNIYPYFSYA 215          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.555e-25
Identity = 69/186 (37.10%), Postives = 108/186 (58.06%), Query Frame = 1
Query:  250 SKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARK-IKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            S +G+ YGQ+ NNLP P+  + L+ KS+ AT+VK+YDA+P+ L+A   +  ++++ + NE               WV+ NV  YLP TKI  ++VGNE+L+    ++   L PAM+ I  +L   G  K I V T  ++ +L  S+PPS  +FR D+  S + P+L F  +T S   ++AY FF +
Sbjct:   25 SSIGINYGQVANNLPPPKNVIPLL-KSVGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQMSDPIKAQG--WVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLLGS-LTPILDFHVKTGSPILINAYPFFAY 206          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.524e-25
Identity = 70/209 (33.49%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  202 LLASVMFFSIG-----SAEMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXD--QWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVGTPSAMDVL-QSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPW 804
            LL  +M  + G     SA  S  +GV YG   +NLPSP      +       RVK++DANP  + A   T I +++ +PN                  W+R N+ PY+P T +  LL GNEIL   D ++  +L+PAMR++ ++LK  G   ++V TP  + +L  S   PSN +FR+  +  +   ML F   T S F V+ Y +F +
Sbjct:    3 LLILLMLLAAGAAGAESATPSLHIGVNYGANADNLPSPTSVATFLATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGLTGVRVTTPHYLGILAPSDGIPSNASFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSY 211          
BLAST of FC878614 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.524e-25
Identity = 62/185 (33.51%), Postives = 108/185 (58.38%), Query Frame = 1
Query:  259 GVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEXXXXXXXXXXXXXDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLG-ARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWSS 810
            GVCYG+LGNNLP+PQE V L  ++    R++IY  +P++L+AL+ ++I++ + +PN+             ++WV+ N+  Y    + RY+ VGNE+   P+ S    LVPA+  I++++   G   ++KV T      L  SFPPS G+F+SD   + +  ++ FL    +   V+ Y++F +++
Sbjct:   35 GVCYGRLGNNLPTPQEVVALYNQA-NIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNA-NKWVQDNIKNYANNVRFRYVSVGNEVK--PEHSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTA 215          
The following BLAST results are available for this feature:
BLAST of FC878614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
EA6_ARATH6.932e-5053.44Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E1311_ARATH1.269e-3543.85Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1312_ARATH1.775e-2937.68Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1313_ARATH5.164e-2940.00Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E1314_ARATH1.272e-2732.83Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E137_ARATH2.834e-2738.17Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
GUB_NICPL4.834e-2735.05Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E1310_ARATH1.555e-2537.10Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E13B_WHEAT4.524e-2533.49Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E13A_SOYBN4.524e-2533.51Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF16RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878614 ID=FC878614; Name=FC878614; organism=Citrus clementina; type=EST; length=812bp
ATAAAAATTAATTAAACGTCAGTCCACCGTATCAACAAAGTGACGACCCT
CGAGTCTTTGACGCATTATTAAATGCTGTAGCTCTCAACTCTCCCTGGCA
ACAGCGTCACACAGTCTTTTGAACACTACTCCTCCGGTTTTCGTCTCTGC
TTCCCAAGAAACAAGCCCATAACGAAGATGGGTCTTGTTGTTGCTCATCT
GTTGTTGGCCTCCGTTATGTTCTTCTCTATTGGAAGTGCAGAGATGTCAA
GCAAAGTGGGGGTATGCTACGGTCAGCTGGGGAACAACCTTCCATCGCCA
CAGGAGTCGGTGGAACTCATGATCAAATCTCTGAAAGCAACACGGGTCAA
AATCTACGATGCCAATCCGAAGATCCTGAAAGCCCTGAAGAACACAGACA
TCCAAGTGTCCATCATGGTTCCGAATGAAATCATCAACAACATTTCCTTA
AGCAGCCAATCCCTCTCCGACCAGTGGGTCCGAACCAACGTCCTCCCTTA
TCTCCCCGGTACCAAAATCCGATATCTCCTCGTCGGCAACGAGATCCTTA
GCCTCCCCGATAAGTCAATCTGGCCCAACCTCGTACCGGCCATGCGTAAA
ATCAGAAAATCCCTGAAAACCCTCGGTGCCCGCAAGATCAAAGTCGGTAC
CCCCTCCGCTATGGATGTCCTGCAGTCGTCGTTTCCCCCTTCCAACGGCA
CATTTCGGTCCGATATCTCGGAATCGGTCATGCGGCCGATGTTGCATTTC
TTGAACCGGACGAAATCGTTTTTCTTCGTGGATGCTTACACGTTCTTCCC
TTGGTCGTCGGA
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