FC878624

Overview
NameFC878624
Unique NameFC878624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10552 contig Ccv1_Contig10552:1..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB1G_ARATH (ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.831e-75
Identity = 161/233 (69.10%), Postives = 181/233 (77.68%), Query Frame = 3
Query:   66 NSMELTHITRSASGVSPTLGQLLKRVGDVRKEQTGDETPVHQILDVSDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            +SMEL  I+   S    TLGQLLK V DVRK   GDETPVH+ L+  D +    R++PFVLSF+NLTY+V  R K +    +F R+          DP   +    KTKTLLN+ISGE RDGEIMAVLGASGSGKSTLIDALANRIAK SLKGT+KLNGE L+SRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPR+L KSKKK+RVQALIDQLG+RNAAKT+IGDEGH
Sbjct:   11 DSMELNTIS---SIHDSTLGQLLKNVSDVRKMAIGDETPVHESLN-QDYNDGYMRTVPFVLSFDNLTYNVSVRPK-LDFRNLFPRR-------RTEDPEIAQTARPKTKTLLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGH 231          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB16G_ARATH (ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.835e-74
Identity = 158/225 (70.22%), Postives = 174/225 (77.33%), Query Frame = 3
Query:  111 SPTLGQLLKRVGDVRKEQTGDETPVHQILDVSDTSSVE------TRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENL-FSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            S TLGQLLK V DVRK + GDETPVH+  D  D SS++       R +PFVLSFNNLTY+V  RRK                 +   D VP     FSKTKTLL++ISGE RDGEI+AVLGASGSGKSTLIDALANRIAK SLKGT+ LNGE L+SRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPR+L KSKKK+RVQALIDQLG+RNAAKT+IGDEGH
Sbjct:   23 SLTLGQLLKNVSDVRKVEVGDETPVHEFFD-RDGSSLDGDNDHLMRPVPFVLSFNNLTYNVSVRRK-----------------LDFHDLVPWRRTSFSKTKTLLDNISGETRDGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEALQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGH 229          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB6G_ARATH (ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.351e-66
Identity = 154/255 (60.39%), Postives = 178/255 (69.80%), Query Frame = 3
Query:    3 NRVVAENNTSPARDTLPFFSTNSMELTHITRSASGVSPTLGQLLKRVGDVRKEQTGDETPVHQILDVSDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFS-KTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            +RVVA ++       LPFFS     ++     AS    T  QLL+ V D  +         H  +D++       +S+PFVLSF +LTYSVK RRK       +RR      +V++    P E +FS KTKTLLN I+GEARDGEI+AVLGASGSGKSTLIDALANRIAK SLKG + LNGEVL S+M K ISAYVMQDDLLFPMLTVEETLMFAAEFRLPR+LSKSKK +RVQALIDQLGLRNAA TVIGDEGH
Sbjct:    2 SRVVAADDNM----ALPFFSPEFGNVS----GASSSPTTFAQLLQNVDDSTRRSHHQH---HVDVDLASPD----QSVPFVLSFTDLTYSVKVRRKF-----TWRR------SVSSDPGAPSEGIFSSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGEVLNSKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKSLRVQALIDQLGLRNAANTVIGDEGH 230          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.248e-64
Identity = 151/252 (59.92%), Postives = 170/252 (67.46%), Query Frame = 3
Query:   30 SPAR----DTLPFFST--NSMELTHITRSASGVSPTLGQLLKRVGDVRKEQT-GDETPVHQILDVSDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            SPA+    D LP F     S+EL    R  + VS TL +LL  V D   +Q+   +  V      S  SS    S PFVLSF +LTYSVK ++K    P                 P  G ++   TK LLN ISGEAR+GE+MAVLGASGSGKSTLIDALANRI+KESL+G I LNGEVLES + KVISAYVMQDDLLFPMLTVEETLMF+AEFRLP +LSK KKK RVQALIDQLGLRNAAKTVIGDEGH
Sbjct:    9 SPAKRVNGDGLPLFYNIHKSVELQRCHRDTARVSVTLAELLMSVEDEGDDQSRAMDIAVASNFWSSVPSSRVPSSSPFVLSFKDLTYSVKIKKKFKPFPCC------------GNSPFDGNDMEMNTKVLLNGISGEAREGEMMAVLGASGSGKSTLIDALANRISKESLRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPSSLSKKKKKARVQALIDQLGLRNAAKTVIGDEGH 248          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.457e-63
Identity = 140/234 (59.83%), Postives = 170/234 (72.65%), Query Frame = 3
Query:   69 SMELTHITRSASGVSPTLGQLLKRVGDV-RKEQTGDETPVHQILDVSDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGE-VLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            S E+  I+ +    SPTLG+LLK   D  RK+  G+  P   ILD++  +  ETRS+PF+LSFNNL+Y+V  RR+       F R+                   +  KTLL+DI+GEARDGEI+AVLG SG+GKSTLIDALA R+A++SLKGT+ LNGE VL+SR+LKVISAYVMQDDLLFPMLTV+ETLMFA+EFRLPR+L KSKK  RV+ LIDQLGLRNAA TVIGDEGH
Sbjct:    5 SAEILDISHTGGNESPTLGELLKDFNDSGRKKYPGENAPTQHILDLAPAA--ETRSVPFLLSFNNLSYNVVLRRRFD-----FSRRKT-----------------ASVKTLLDDITGEARDGEILAVLGGSGAGKSTLIDALAGRVAEDSLKGTVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLPKSKKMERVETLIDQLGLRNAADTVIGDEGH 214          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.769e-61
Identity = 147/263 (55.89%), Postives = 175/263 (66.54%), Query Frame = 3
Query:   27 TSPAR-----DTLPFFSTNSMELTHITRSA--SGVSPTLGQLLKRVGDVRKEQT------GDETPVHQILDV----SDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            +SPA+     + LP +  N M +    R +  + VS T  + L  V D R +++      G  +P++         +   +    S PFVLSF +LTYSVK ++K   L A  RR               G +    TK LLN ISGEAR+GE+MAVLGASGSGKSTLIDALANRIAK+SL+G+I LNGEVLES M KVISAYVMQDDLLFPMLTVEETLMF+AEFRLPR+LSK KKK RVQALIDQLGLR+AAKTVIGDEGH
Sbjct:    8 SSPAKRVDGNNDLPMYYVNPMSVEPQGRPSDTTRVSVTFAEHLMNVEDARNDESASSRALGIASPINSAASSFNSWASAPASSISSSPFVLSFTDLTYSVKIQKKFNPL-ACCRRS--------------GNDSSVNTKILLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIAKDSLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKKKKKARVQALIDQLGLRSAAKTVIGDEGH 255          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.336e-59
Identity = 132/223 (59.19%), Postives = 160/223 (71.75%), Query Frame = 3
Query:  111 SPTLGQLLKRVGDVRKEQTGD----ETPVHQILDVSDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGE-VLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            SPTL +LLK     RK  +GD    + P H I+DV    ++  + +P+VL+FNNL Y V  RR+       F RQ                   +  KTLL+D+SGEA DG+I+AVLGASG+GKSTLIDALA R+A+ SL+G++ LNGE VL+SR+LKVISAYVMQDDLLFPMLTV+ETLMFA+EFRLPR+LSKSKK  RV+ALIDQLGLRNAA TVIGDEGH
Sbjct:   27 SPTLDELLKDCDSFRKGDSGDGVKSDDPAHHIIDVE---ALYVKPVPYVLNFNNLQYDVTLRRRF-----GFSRQ-------------------NGVKTLLDDVSGEASDGDILAVLGASGAGKSTLIDALAGRVAEGSLRGSVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLSKSKKMERVEALIDQLGLRNAANTVIGDEGH 222          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB17G_ARATH (ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52
Identity = 113/188 (60.11%), Postives = 137/188 (72.87%), Query Frame = 3
Query:  201 VSDTSSVETRSLPFVLSFNNLTYSVKARRKSITLPAVFRRQPHPLGAVTATDPVPGENLFSKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIGDEGH 764
            V D    E   +PFVL+FN+LTY+V  +++               G      P       +K KTLLN I+GEA++GEI+A+LGASG+GKSTLIDALA +IA+ SLKGT+ LNGE L+SR+L+VISAYVMQ+DLLFPMLTVEETLMFAAEFRLPR+LSKSKK+ RV+ LIDQLGL     TVIGDEGH
Sbjct:    7 VIDVDESEIPPIPFVLAFNDLTYNVTLQQR--------------FGLRFGHSP-------AKIKTLLNGITGEAKEGEILAILGASGAGKSTLIDALAGQIAEGSLKGTVTLNGEALQSRLLRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLSKSKKRNRVETLIDQLGLTTVKNTVIGDEGH 173          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.248e-22
Identity = 55/124 (44.35%), Postives = 85/124 (68.55%), Query Frame = 3
Query:  381 SKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            S  K++LN ISG A  GE++A++G SGSGK+TL++AL  R  ++++ G++  N +   S+ LK    +V QDD+LFP LTV+ETL + A  RLP+TL++ +K+ R  ++I +LGL     T+IG
Sbjct:  162 SSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPY-SKHLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQDTMIG 284          
BLAST of FC878624 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.129e-22
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 3
Query:  381 SKTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTIKLNGEVLESRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKIRVQALIDQLGLRNAAKTVIG 752
            S  K +L  ISG    GE++A++G SGSGK+TL+  LA RI++ S  G++  N +   S+ LK    +V QDD+LFP LTV+ETL +AA  RLP+TL++ +KK R   +I +LGL     T+IG
Sbjct:  174 SVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPY-SKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIG 296          
The following BLAST results are available for this feature:
BLAST of FC878624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
AB1G_ARATH2.831e-7569.10ABC transporter G family member 1 OS=Arabidopsis t... [more]
AB16G_ARATH1.835e-7470.22ABC transporter G family member 16 OS=Arabidopsis ... [more]
AB6G_ARATH5.351e-6660.39ABC transporter G family member 6 OS=Arabidopsis t... [more]
AB20G_ARATH2.248e-6459.92ABC transporter G family member 20 OS=Arabidopsis ... [more]
AB18G_ARATH1.457e-6359.83ABC transporter G family member 18 OS=Arabidopsis ... [more]
AB2G_ARATH6.769e-6155.89ABC transporter G family member 2 OS=Arabidopsis t... [more]
AB19G_ARATH6.336e-5959.19ABC transporter G family member 19 OS=Arabidopsis ... [more]
AB17G_ARATH3.367e-5260.11ABC transporter G family member 17 OS=Arabidopsis ... [more]
AB27G_ARATH1.248e-2244.35ABC transporter G family member 27 OS=Arabidopsis ... [more]
AB22G_ARATH2.129e-2245.97ABC transporter G family member 22 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ12YF18RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878624 ID=FC878624; Name=FC878624; organism=Citrus clementina; type=EST; length=819bp
CTAATCGCGTTGTTGCGGAGAATAATACATCGCCCGCAAGAGACACTTTA
CCGTTCTTCAGTACAAACTCAATGGAGCTGACCCACATCACGCGATCCGC
ATCCGGCGTGTCGCCCACGCTCGGCCAGTTGCTCAAGCGAGTCGGGGACG
TACGGAAGGAGCAAACCGGCGACGAGACTCCGGTCCATCAGATTCTCGAC
GTCAGCGACACAAGCAGCGTCGAAACAAGATCACTGCCTTTCGTTTTGTC
CTTCAACAACCTGACTTACAGCGTCAAAGCTCGCCGCAAGTCCATCACTC
TCCCCGCAGTGTTCCGCCGTCAACCTCATCCCCTCGGCGCCGTCACAGCG
ACGGATCCCGTTCCAGGCGAGAACTTGTTCTCCAAAACAAAGACTCTGTT
GAACGACATCTCCGGCGAGGCGCGCGACGGAGAAATCATGGCGGTCCTTG
GGGCTAGCGGCTCCGGGAAGTCGACTCTAATCGACGCGCTGGCGAATCGT
ATAGCGAAAGAGAGCTTGAAAGGTACCATCAAGCTAAACGGCGAAGTGTT
GGAGTCGAGGATGCTGAAGGTGATATCAGCTTACGTCATGCAAGACGACC
TTCTGTTCCCGATGCTCACCGTCGAGGAGACGCTGATGTTCGCTGCCGAG
TTTCGGCTGCCACGTACACTGTCGAAGTCGAAGAAGAAGATTCGCGTCCA
AGCTCTGATCGATCAGCTCGGCTTAAGGAACGCGGCAAAGACAGTTATAG
GAGACGAAGGACACAGGGGAGTGTCGGGCGGCGACCGACGTCGTGTCTCG
ATTGGAATCGACATAATTC
back to top