FC878629

Overview
NameFC878629
Unique NameFC878629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878629 vs. ExPASy Swiss-Prot
Match: SKI31_ARATH (F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.519e-47
Identity = 88/162 (54.32%), Postives = 117/162 (72.22%), Query Frame = -2 
Query:  249 KEYYIQMQAAKRSQAPLPSQVKDDRIIIDKTVGDQVSLWKSSKGLTDNVLTDHACSGDLCTYHQVGNLFVCEKTGYVHVCDDTCREMAMDAKDGIMVCKISGRCFEMLMSPDELEPDPE---QQSSVIDEEPFMGSGRFARAYMLGYSCHDEKELEACLRFC 725
            KEYY+ MQAAKRSQAPLPSQ+ DDRII+D TV +QVSLWK SKGLTD  +T H C G  C+YHQ+ ++F+C++TG VHVCDD C+E+ +  +  +MVC ISG C + L+   + EPD +   ++ + ++ E F    R ARA+ LGY+C DE+ELE  LRFC
Sbjct:  157 KEYYVHMQAAKRSQAPLPSQMVDDRIILDNTVLEQVSLWKKSKGLTDKAVTGHICLGTKCSYHQIDDVFICKETGNVHVCDDNCKEVILSPEGDLMVCTISGVCSDTLLV--QTEPDADGCYEEEAELEAEVFTDKSRLARAFELGYNCDDEQELERTLRFC 316
The following BLAST results are available for this feature:
BLAST of FC878629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI31_ARATH4.519e-4754.32F-box protein SKIP31 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AF01FM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878629 ID=FC878629; Name=FC878629; organism=Citrus clementina; type=EST; length=726bp
TTTTTTTTTTTTTTTTTTTTTTTTTATATCCGAGCTTATTATTTATTAAT
ATAACATAACTACGACCAGATCACATCGGTAGAGTGAGAGCAACAAGAAA
CATAATTCTCTGCTACCTACCACTAAATAATTTATTCTTACAAACTGTCA
AATTGAGCACTCTTAAATATTACATAAGGCAATTGTGTAAAATTTATTGC
CAAATCTAAACACATCTTGTACAACCTGGAGTCTGAAGATTTAAGTCAGC
AAAACCTCAAACAAGCTTCAAGCTCCTTCTCATCATGACAACTATATCCC
AACATATAGGCACGTGCAAATCGACCAGACCCCATGAAAGGTTCTTCATC
AATCACACTGCTTTGTTGTTCAGGATCTGGTTCCAATTCATCTGGTGACA
TCAACATTTCAAAACAACGGCCAGAAATTTTACAGACCATAATCCCGTCT
TTGGCGTCCATAGCCATCTCTCTGCATGTATCATCACAAACATGAACATA
TCCAGTCTTCTCACAAACAAATAAATTACCAACTTGGTGGTAAGTGCACA
GATCTCCAGAACAAGCATGGTCAGTGAGCACGTTATCAGTCAAGCCCTTA
CTGCTTTTCCACAAAGAAACTTGATCCCCAACTGTCTTGTCAATAATGAT
CCGATCATCTTTCACCTGTGAAGGAAGTGGTGCTTGGCTTCTCTTAGCAG
CTTGCATCTGGATATAGTACTCTTTA
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