FC878630

Overview
NameFC878630
Unique NameFC878630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11130 contig Ccv1_Contig11130:196..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.070e-49
Identity = 97/190 (51.05%), Postives = 132/190 (69.47%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+  +PN+Y+F T Y+QM++DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    FD+V T EE+V+D V+EDLN+REQ   + V VIN++++DNHEEA +G  L  +LCQ              ++  FE++  R  L+S+ FY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYNDLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLNSREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSHRPFLHSVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.636e-48
Identity = 97/190 (51.05%), Postives = 130/190 (68.42%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN+REQ   + V V+N++++DNHEEA +G  L  +LCQ              ++  FE++  R  L+++ FY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.636e-48
Identity = 98/190 (51.58%), Postives = 130/190 (68.42%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN+REQ   + V VIN++++DNHEEA +G  L  +LCQ              ++  FE++  R  L+++ FY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.636e-48
Identity = 98/190 (51.58%), Postives = 130/190 (68.42%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN+REQ   + V VIN++++DNHEEA +G  L  +LCQ              ++  FE++  R  L+++ FY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.442e-48
Identity = 97/190 (51.05%), Postives = 130/190 (68.42%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN+REQ   + V V+N++++DNHEEA +G  L  +LCQ              ++  FE++  R  L+++ FY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.442e-48
Identity = 97/190 (51.05%), Postives = 130/190 (68.42%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN+REQ   + V V+N++++DNHEEA +G  L  +LCQ              ++  FE++  R  L+++ FY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_XENLA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis GN=ssu72 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.914e-47
Identity = 98/194 (50.52%), Postives = 130/194 (67.01%), Query Frame = 1
Query:  235 TMKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            T   R A+VCSSNQNRSMEAH +L +  F+V S+GTG HVKLPGP+  +PNVY+F T Y+QM+ DL +KD ELY +NGIL ML RN  +K  P+R+Q N  D  FD+V T EE+V+D VVE+LN+REQ   + V VIN++++DNHEEA +G  L  +LCQ              ++  FE +  R  L++I FY
Sbjct:    3 TAPLRVAVVCSSNQNRSMEAHNILSKRSFNVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYSDLLKKDKELYTQNGILHMLDRNRRIKPRPERFQ-NCKD-YFDLVITCEERVYDQVVEELNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEDKSGRTFLHTICFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_DICDI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.939e-44
Identity = 86/193 (44.56%), Postives = 130/193 (67.36%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTRE--QPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R AMVC+SNQNRS+EAH+L  ++GF ++ S+GT AH KLPGPS+ +PN++ FGTPY++++  L+ +D ELY RNG+L ML+RNI VK AP++WQ+      F+IV+TF+++V+D V+EDL  R+     ++ V +INL+VKD HEEA  G +   ++                I+  F K+  R+ L+++ FY
Sbjct:   23 RIAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIYTSLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDLLQRDVSSSLLQPVHIINLQVKDTHEEAVGGAQHALEITSIIEKTLNWEEKLDQILEDFYKQTSRQFLHTLMFY 214          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: S72L1_HUMAN (Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 1 OS=Homo sapiens PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.288e-42
Identity = 87/190 (45.79%), Postives = 122/190 (64.21%), Query Frame = 1
Query:  247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816
            R A+VC SN NRSMEAH +L+R G  V S+GT +HV+LPGP    P VY+F T YKQM++DL RKD E Y RNGIL +L RN  +K  P+R+Q+     SFD++FT EE V+DTVVEDL +REQ   + V VIN++++D  E+A +G  L  ++CQ              ++   E++  +  L+++ FY
Sbjct:    7 RVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKQMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQE--CTDSFDVIFTCEESVYDTVVEDLCSREQQTFQPVHVINMDIQDTLEDATLGAFLICEICQCLQQSDDIEDNLEELLLQMEEKAGKSFLHTVCFY 194          
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_SCHPO (RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Schizosaccharomyces pombe GN=ssu72 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.121e-41
Identity = 83/190 (43.68%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  253 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC-QXXXXXXXXXXXXXXIIAAFEKRH-RRKLLYSISFY 816
            +++C+SNQNRSMEAH +LK  G+ V S+GTG+ V+LPGPS+ +PN+Y+FG PY +++ +L  +D  LY  NG+L ML RN  +K AP RWQD   D  ++IV T EE+ +D + EDL  R +   + V +IN+++KDNHEEA++GG+   DL  +              I+A F+  H +  +LY+I F+
Sbjct:   10 SVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQ--DSIYNIVITCEERCYDAICEDLYRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSNHPKLPVLYTIHFF 197          
The following BLAST results are available for this feature:
BLAST of FC878630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SSU72_DANRE1.070e-4951.05RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_MOUSE2.636e-4851.05RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_CHICK2.636e-4851.58RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_BOVIN2.636e-4851.58RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_RAT3.442e-4851.05RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_HUMAN3.442e-4851.05RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_XENLA2.914e-4750.52RNA polymerase II subunit A C-terminal domain phos... [more]
SSU72_DICDI3.939e-4444.56RNA polymerase II subunit A C-terminal domain phos... [more]
S72L1_HUMAN6.288e-4245.79Putative RNA polymerase II subunit A C-terminal do... [more]
SSU72_SCHPO3.121e-4143.68RNA polymerase II subunit A C-terminal domain phos... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878630 ID=FC878630; Name=FC878630; organism=Citrus clementina; type=EST; length=901bp
TGTATCTGGTGCAATTTCCTCAGAGTCGAAATCTCGAAATAGACCCAAAG
CCCAAAACAGTGGCGTCGAGCACCAAAGAGAACCAAATCAACAACGCCGC
TGAAATCCCGCCTCATCGCACTCCGGTCGCCACCAGCACACTGCCGCAAG
CAGTCACCGTCGACTGTACTAACATTTTTTGTAGAGACTCTACTCGAGTT
GGAATTGGATCAAGAAGACTGGGAGTAGGCAATCACCATGAAATACCGGT
ATGCCATGGTATGCTCGTCCAACCAGAACCGAAGTATGGAGGCACATTAT
CTCCTCAAGAGACATGGCTTCGACGTTTCATCCTATGGCACTGGAGCTCA
CGTTAAGCTCCCTGGACCATCACTGAGAGAACCTAATGTCTACGAATTTG
GTACTCCCTACAAACAGATGTTTGATGATCTCCGCCGCAAAGACCCCGAA
CTGTACAAGCGTAATGGTATTTTGCCAATGCTTAAAAGGAATATAGGTGT
GAAAGCGGCACCTCAACGTTGGCAAGATAATGCTCTTGATGGTTCCTTTG
ATATTGTTTTTACTTTTGAAGAAAAGGTTTTTGACACGGTTGTTGAAGAT
CTCAATACTCGAGAACAGCCTTTTATGAAAACTGTTCTGGTGATCAACTT
GGAGGTGAAAGATAACCATGAGGAGGCAGCCATTGGAGGACGACTAACTT
TTGATCTGTGCCAGGAGATCGAAGCAGCTGAATCATGGGAGGAGTCTATT
GATGACATTATAGCTGCATTTGAGAAACGGCACCGGCGAAAGCTCTTGTA
TAGTATATCTTTCTATTGAAGACATCTATATACTCGAATTGGATGACTCA
TCTTTTCCAACCTCGAGGTCTAATTTCGTAAGGTCAGTGAATCTCCTGAC
T
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