FC878630
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 1.070e-49 Identity = 97/190 (51.05%), Postives = 132/190 (69.47%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+ +PN+Y+F T Y+QM++DL RKD ELY +NGIL ML RN +K+ P+R+Q + FD+V T EE+V+D V+EDLN+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE++ R L+S+ FY Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYNDLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLNSREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSHRPFLHSVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.636e-48 Identity = 97/190 (51.05%), Postives = 130/190 (68.42%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN+REQ + V V+N++++DNHEEA +G L +LCQ ++ FE++ R L+++ FY Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.636e-48 Identity = 98/190 (51.58%), Postives = 130/190 (68.42%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE++ R L+++ FY Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.636e-48 Identity = 98/190 (51.58%), Postives = 130/190 (68.42%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE++ R L+++ FY Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 3.442e-48 Identity = 97/190 (51.05%), Postives = 130/190 (68.42%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN+REQ + V V+N++++DNHEEA +G L +LCQ ++ FE++ R L+++ FY Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 3.442e-48 Identity = 97/190 (51.05%), Postives = 130/190 (68.42%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+ +PNVY+F T Y QM++DL RKD ELY +NGIL ML RN +K P+R+Q N D FD++ T EE+V+D VVEDLN+REQ + V V+N++++DNHEEA +G L +LCQ ++ FE++ R L+++ FY Sbjct: 7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_XENLA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis GN=ssu72 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.914e-47 Identity = 98/194 (50.52%), Postives = 130/194 (67.01%), Query Frame = 1 Query: 235 TMKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 T R A+VCSSNQNRSMEAH +L + F+V S+GTG HVKLPGP+ +PNVY+F T Y+QM+ DL +KD ELY +NGIL ML RN +K P+R+Q N D FD+V T EE+V+D VVE+LN+REQ + V VIN++++DNHEEA +G L +LCQ ++ FE + R L++I FY Sbjct: 3 TAPLRVAVVCSSNQNRSMEAHNILSKRSFNVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYSDLLKKDKELYTQNGILHMLDRNRRIKPRPERFQ-NCKD-YFDLVITCEERVYDQVVEELNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEDKSGRTFLHTICFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_DICDI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 3.939e-44 Identity = 86/193 (44.56%), Postives = 130/193 (67.36%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTRE--QPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R AMVC+SNQNRS+EAH+L ++GF ++ S+GT AH KLPGPS+ +PN++ FGTPY++++ L+ +D ELY RNG+L ML+RNI VK AP++WQ+ F+IV+TF+++V+D V+EDL R+ ++ V +INL+VKD HEEA G + ++ I+ F K+ R+ L+++ FY Sbjct: 23 RIAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIYTSLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDLLQRDVSSSLLQPVHIINLQVKDTHEEAVGGAQHALEITSIIEKTLNWEEKLDQILEDFYKQTSRQFLHTLMFY 214
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: S72L1_HUMAN (Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 1 OS=Homo sapiens PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.288e-42 Identity = 87/190 (45.79%), Postives = 122/190 (64.21%), Query Frame = 1 Query: 247 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQXXXXXXXXXXXXXXIIAAFEKRHRRKLLYSISFY 816 R A+VC SN NRSMEAH +L+R G V S+GT +HV+LPGP P VY+F T YKQM++DL RKD E Y RNGIL +L RN +K P+R+Q+ SFD++FT EE V+DTVVEDL +REQ + V VIN++++D E+A +G L ++CQ ++ E++ + L+++ FY Sbjct: 7 RVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKQMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQE--CTDSFDVIFTCEESVYDTVVEDLCSREQQTFQPVHVINMDIQDTLEDATLGAFLICEICQCLQQSDDIEDNLEELLLQMEEKAGKSFLHTVCFY 194
BLAST of FC878630 vs. ExPASy Swiss-Prot
Match: SSU72_SCHPO (RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Schizosaccharomyces pombe GN=ssu72 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 3.121e-41 Identity = 83/190 (43.68%), Postives = 124/190 (65.26%), Query Frame = 1 Query: 253 AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC-QXXXXXXXXXXXXXXIIAAFEKRH-RRKLLYSISFY 816 +++C+SNQNRSMEAH +LK G+ V S+GTG+ V+LPGPS+ +PN+Y+FG PY +++ +L +D LY NG+L ML RN +K AP RWQD D ++IV T EE+ +D + EDL R + + V +IN+++KDNHEEA++GG+ DL + I+A F+ H + +LY+I F+ Sbjct: 10 SVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQ--DSIYNIVITCEERCYDAICEDLYRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSNHPKLPVLYTIHFF 197 The following BLAST results are available for this feature:
BLAST of FC878630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878630 ID=FC878630; Name=FC878630; organism=Citrus clementina; type=EST; length=901bpback to top |