FC878649

Overview
NameFC878649
Unique NameFC878649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4090 contig Ccv1_Contig4090:1..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878649 vs. ExPASy Swiss-Prot
Match: LUMI_ARATH (Homeobox protein LUMINIDEPENDENS OS=Arabidopsis thaliana GN=LD PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.144e-57
Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = 3 
Query:  342 RANVLLSKWSKMFSRSQALKKHGAKHST-DSQNELILKQSIGEIMADXXXXXXXXXXXXXXXTLCESSESFRKSESPQSVKLLTASSDDSGRKNILGVSSSYNRERRKTQFVEQPGSKSAGRSLQASRLAPVGQARPMSADDIQKSKVES 788
            RA  LLS+W+K+F++ QA+KK     S  DSQ++L+LKQSI EIM D                    SE+ R+ ES Q  KLL  S+DDS +K++LG + SYN+ERRK Q VEQPG K+AG+S Q  R+   G++RPMSADDIQK+K+ +
Sbjct:  298 RAKGLLSRWTKLFAKIQAMKKQNRNSSQIDSQSQLLLKQSIAEIMGDSSNPEDILSLSNG------KSENVRRIESSQGPKLLLTSADDSTKKHMLGSNPSYNKERRKVQMVEQPGQKAAGKSPQTVRIGTSGRSRPMSADDIQKAKMRA 441

HSP 2 Score: 113.62 bits (283), Expect = 1.144e-57
Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:    1 KEETFSGQVKLMEQILRIENSSILYWFLTKGGVMILATWLSQAADEEQTSXXXXXXXXXXXFACLVCHCY*LS**LHFLTGMQVLCHLPLQKALPEQMSAILQSVKRLRYYRAS 342
            KEETFSGQVKLME I++I+++S+L WFL+KGGV+IL TWLSQAA EEQTS                            L  ++VLCHLPL KA PE MSAILQSV  LR+YR S
Sbjct:  206 KEETFSGQVKLMEWIMQIQDASVLIWFLSKGGVLILTTWLSQAASEEQTSV--------------------------LLLILKVLCHLPLHKASPENMSAILQSVNGLRFYRIS 293
The following BLAST results are available for this feature:
BLAST of FC878649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LUMI_ARATH1.144e-5748.67Homeobox protein LUMINIDEPENDENS OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA30BB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878649 ID=FC878649; Name=FC878649; organism=Citrus clementina; type=EST; length=795bp
AAGGAAGAAACATTTTCTGGGCAAGTGAAGCTGATGGAACAGATCTTGCG
GATAGAAAATTCTTCAATTCTATATTGGTTTTTGACCAAAGGTGGTGTGA
TGATCTTAGCGACATGGCTGAGTCAAGCAGCTGATGAGGAACAAACAAGT
GTTCTTATTGTCATCCTTAATGTATGAATTCTGTTTGCCTGTTTAGTTTG
TCATTGCTACTAACTTAGCTAGTAATTACATTTTTTGACTGGCATGCAGG
TTCTCTGTCACTTGCCATTACAAAAAGCTCTCCCAGAACAAATGTCAGCC
ATACTGCAAAGCGTTAAAAGACTGCGGTACTACAGGGCGTCAGGGCAAAC
GTTTTGTTATCAAAATGGAGCAAGATGTTTTCAAGAAGCCAAGCTTTGAA
GAAACATGGCGCAAAACACTCTACTGACTCACAGAACGAGTTAATTCTTA
AACAGAGTATTGGCGAAATTATGGCTGATGAATCATGGCTCTCAAGTAGT
AATGCTTCTGAGAACAGTCTTGCTACCTTGTGCGAAAGTTCGGAGAGTTT
CAGGAAGTCAGAATCACCACAATCAGTTAAGTTATTGACAGCATCTTCAG
ATGACTCTGGAAGGAAGAACATCCTTGGTGTATCTTCATCATATAACAGA
GAACGCCGAAAAACTCAGTTTGTGGAACAGCCAGGTTCAAAATCGGCTGG
TAGAAGTCTGCAGGCCTCAAGATTAGCTCCTGTGGGTCAAGCCCGTCCTA
TGTCTGCAGATGATATTCAAAAAAGCAAAGTTGAAAGCTATGTAT
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