FC878686

Overview
NameFC878686
Unique NameFC878686
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878686 vs. ExPASy Swiss-Prot
Match: TRPX_ARATH (Anthranilate synthase component I-2, chloroplastic OS=Arabidopsis thaliana GN=ASA2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.459e-50
Identity = 101/147 (68.71%), Postives = 121/147 (82.31%), Query Frame = 3
Query:  390 SKSLSFTSSSYRARTLTCAASASL-LFVDQLAKFQEASKKGNLIPLYRCIFSDHLTPVLAYRCLVKEDDRDAPSFLFESVEPGSQASSIGRYSVVGAQPAIEIVAKENMVTILDHKDGQRTEEIVDDPMVVPRRIMEGWKPQLIDEL 827
            SK L F   S R  ++ C+ + SL L  +Q  KF++AS+KGNL+PL+RC+FSDHLTP+LAYRCLVKEDDRDAPSFLFESVEPGSQ+S+IGRYSVVGAQP IEIVAK N+VT++DH    RTEE VDDPM+VP++IME W PQ IDEL
Sbjct:   55 SKLLHF---SRRLPSIKCSYTPSLDLSEEQFTKFKKASEKGNLVPLFRCVFSDHLTPILAYRCLVKEDDRDAPSFLFESVEPGSQSSNIGRYSVVGAQPTIEIVAKGNVVTVMDHGASLRTEEEVDDPMMVPQKIMEEWNPQGIDEL 198          
BLAST of FC878686 vs. ExPASy Swiss-Prot
Match: TRPE_ARATH (Anthranilate synthase component I-1, chloroplastic OS=Arabidopsis thaliana GN=ASA1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.930e-45
Identity = 100/191 (52.36%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  270 MNALHMETLALTPSQLPSTVG---FSSTVSVNFNYRVASSKWRSKSLSFTSSSYRARTLTCAASASLLFVDQLAKFQEASKKGNLIPLYRCIFSDHLTPVLAYRCLVKEDDRDAPSFLFESVEPGSQASSIGRYSVVGAQPAIEIVAKENMVTILDHKDGQRTEEIVDDPMVVPRRIMEGWK--PQLIDEL 827
            MN   M+ L  +   LPS       SS+V+V        + +  +S ++  S    + ++ +  AS+  V    K  +ASK  NLIP+YRCIFSD LTPVLAYRCLVKEDDR+APSFLFESVEPGSQ SS+GRYSVVGAQPA+EIVAKEN V ++DH +   TEE V+DPM +PR+I E W   PQL+ +L
Sbjct:    5 MNVATMQALTFSRRLLPSVASRYLSSSSVTV--------TGYSGRSSAYAPSFRSIKCVSVSPEASI--VSDTKKLADASKSTNLIPIYRCIFSDQLTPVLAYRCLVKEDDREAPSFLFESVEPGSQMSSVGRYSVVGAQPAMEIVAKENKVIVMDHNNETMTEEFVEDPMEIPRKISEKWNPDPQLVQDL 185          
The following BLAST results are available for this feature:
BLAST of FC878686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRPX_ARATH2.459e-5068.71Anthranilate synthase component I-2, chloroplastic... [more]
TRPE_ARATH6.930e-4552.36Anthranilate synthase component I-1, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA76CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878686 ID=FC878686; Name=FC878686; organism=Citrus clementina; type=EST; length=828bp
ATGGACAAGACTCTTCCCCAGCCGCCCCCCCCGGGGCGGCGCGGATGAAA
AGGAATAAGATTTTGTTTCTGCTTTATTTGATCTTGGACTTGCAAAACCC
ATTTCCGTCAATGGGTTGCCATCCATAGCTTCAAATGTGGACAAACATGC
ACTCGTAAAAGGAACTATATATATATATATATATATATGCATTCTTTTAT
CTTATGTGACGGAAACATCGCATTCTTTGTTCTGCCTTATCAAAAAACAT
CACTCAGGAGGCAGCAGTAATGAATGCTCTGCACATGGAAACCCTAGCCC
TCACGCCCTCTCAACTTCCGTCAACCGTCGGTTTCTCCTCAACTGTCTCC
GTTAACTTTAACTACAGAGTTGCTTCCTCAAAATGGCGCTCAAAGTCCCT
CTCTTTTACCAGCTCCAGCTATCGTGCCCGTACACTTACATGCGCTGCCT
CGGCCTCTCTTTTATTCGTTGATCAGTTAGCAAAATTTCAAGAAGCTTCG
AAGAAGGGGAATTTAATTCCTTTGTACCGGTGCATATTCTCGGACCACTT
AACTCCAGTTCTTGCATACAGGTGTTTGGTTAAGGAGGATGATAGAGATG
CTCCGAGCTTTCTGTTTGAGTCGGTTGAGCCTGGTTCGCAAGCTTCCAGT
ATTGGAAGGTATAGTGTTGTTGGAGCTCAGCCAGCTATAGAAATTGTAGC
AAAGGAGAATATGGTTACAATTTTGGACCATAAGGATGGTCAGAGAACAG
AGGAGATTGTGGACGATCCAATGGTGGTTCCTAGGAGAATCATGGAGGGA
TGGAAACCTCAACTTATTGATGAACTTC
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