FC878695

Overview
NameFC878695
Unique NameFC878695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10564 contig Ccv1_Contig10564:1..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878695 vs. ExPASy Swiss-Prot
Match: KDSR_MOUSE (3-ketodihydrosphingosine reductase OS=Mus musculus GN=Kdsr PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 52/181 (28.73%), Postives = 92/181 (50.83%), Query Frame = 1 
Query:  226 IVGVGPNLGRSIARKFAHEGYTVAILARDLGRLSRFADEIARE---EKSQVFAIRIDCSDSRS-----VREAFEGVLSLGFVEVLVYNAYQPVSWQPTNFTEISFDSFQKSIAISSLGAFLCAQQVLSGMVERGKGTIIFTGCSASLNGIAGFSELCCGKFATRALSQCLAREFQPLGVHV 744
            + G    +G+ IA +   +G  + ++AR+  +L +   +I +    +K  V  I +D S   +     +++A E    LG V++LV  A   +S +   F E+   SF+K ++I+ LG+   ++ V++ M ER  G I+F    A   G+ GF+     KFA R L++ L  E +P  V+V
Sbjct:   37 VTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQE---KLGPVDMLVNCAGTSMSGK---FEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYV 211
The following BLAST results are available for this feature:
BLAST of FC878695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KDSR_MOUSE2.957e-1128.733-ketodihydrosphingosine reductase OS=Mus musculus... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878695 ID=FC878695; Name=FC878695; organism=Citrus clementina; type=EST; length=830bp
CAAATGTTTTCAAAGAGAAATGGCTGTTGGTGTCCCTAAGAAGAAAATTA
AAGCATAATAGAAAAGCCCACCCAGTAGCCACTGACTCATCCAGAATCTC
TCCTTCTTCTTCGTCATAAGAAGATAGAATTAGTCTAGTGTCTGTTGTTA
TTAGAAAAGGATAGCAATTTTGCAAAGATGAGAAACATGACAAGCTCTGG
TAGTTCTTGCAGAGGCATCGCTGCCATTGTTGGCGTTGGCCCCAATTTGG
GTCGATCAATTGCCCGCAAGTTTGCCCATGAAGGTTACACAGTCGCCATC
CTCGCCCGTGACCTAGGAAGACTATCAAGATTTGCAGACGAGATAGCGAG
GGAAGAGAAATCTCAAGTATTTGCAATAAGAATCGACTGCTCGGACTCAA
GAAGTGTGAGAGAGGCATTTGAAGGAGTTCTTTCACTTGGATTTGTTGAA
GTGCTTGTTTACAACGCGTATCAGCCAGTTTCTTGGCAACCCACTAACTT
TACTGAAATCAGCTTCGATTCTTTTCAGAAATCCATCGCTATCTCCTCCC
TCGGTGCATTTCTTTGTGCTCAACAGGTTCTTTCTGGCATGGTGGAAAGA
GGAAAGGGAACAATTATCTTCACCGGTTGTTCAGCTTCTCTCAACGGCAT
TGCGGGTTTCTCTGAACTATGCTGCGGGAAATTCGCAACGAGAGCTCTGT
CGCAGTGCCTGGCGAGAGAGTTCCAACCCCTTGGTGTTCACGTCGCGCAT
GTCATCATCGATGGGTGTTGTTGGCCCACCTAGGGGGCCGCGGGCGTCGA
GTCAGGGAACGTGGGTTGGGGAGCAACAAC
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