FC878702

Overview
NameFC878702
Unique NameFC878702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13586 contig Ccv1_Contig13586:1202..2112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EIF3D_ARATH (Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.078e-81
Identity = 144/162 (88.89%), Postives = 158/162 (97.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDVNNQRSFLTLNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFENDY 488
            +M+LVARCE+QSV D+NNQRSFLTLNALNEFD KYSGVDWRQKLETQRGAVLATELKNN NKLAKWTAQ+LLA+AD+MK+G+VSRVHPRDHFNHVIL+V+GYKPKDFA QINL+T+NMWGIVKSIVDLCMKL+EGKYVLVKDPSKPQVRIYEVPPDAFENDY
Sbjct:  389 NMHLVARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLAKWTAQALLANADMMKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQINLNTSNMWGIVKSIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDY 550          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROER (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila erecta GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.285e-50
Identity = 94/163 (57.67%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   + +  F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  375 DIVLVARCEHDGVLQTPSGEAQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROSI (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila simulans GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.678e-50
Identity = 94/163 (57.67%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   + +  F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  375 DIVLVARCEHDGVLQTPSGEPQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROSE (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila sechellia GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.678e-50
Identity = 94/163 (57.67%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   + +  F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  375 DIVLVARCEHDGVLQTPSGEPQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROME (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila melanogaster GN=eIF-3p66 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.678e-50
Identity = 94/163 (57.67%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   + +  F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  375 DIVLVARCEHDGVLQTPSGEPQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROYA (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila yakuba GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.191e-50
Identity = 94/163 (57.67%), Postives = 127/163 (77.91%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   +    F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  375 DIVLVARCEHDGVLQTPSGDSQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROVI (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila virilis GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.862e-50
Identity = 94/163 (57.67%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   + +  FL++ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  375 DIVLVARCEHDGVLQTPSGEPQFLSIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROMO (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila mojavensis GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.862e-50
Identity = 94/163 (57.67%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   + +  FL++ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  375 DIVLVARCEHDGVLQTPSGEPQFLSIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROGR (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila grimshawi GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.862e-50
Identity = 94/163 (57.67%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   + +  FL++ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  375 DIVLVARCEHDGVLQTPSGEPQFLSIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of FC878702 vs. ExPASy Swiss-Prot
Match: EI3D1_DROWI (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila willistoni GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.882e-50
Identity = 93/163 (57.06%), Postives = 128/163 (78.53%), Query Frame = 3
Query:    3 DMYLVARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 485
            D+ LVARCE   V+   + +  F+++ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  373 DIVLVARCEHDGVLQTPSGEPQFMSIKALNEWDSKMANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQRDGKYLIMKDPNKPIIRLYDIPDNTFDSD 535          
The following BLAST results are available for this feature:
BLAST of FC878702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EIF3D_ARATH1.078e-8188.89Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROER1.285e-5057.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROSI1.678e-5057.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROSE1.678e-5057.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROME1.678e-5057.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROYA2.191e-5057.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROVI2.862e-5057.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROMO2.862e-5057.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROGR2.862e-5057.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROWI4.882e-5057.06Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878702 ID=FC878702; Name=FC878702; organism=Citrus clementina; type=EST; length=911bp
ATGATATGTATCTTGTTGCGAGGTGTGAGGTGCAGAGTGTTGTGGATGTT
AATAATCAGAGGTCGTTTTTGACGTTAAATGCTCTTAATGAGTTCGATTC
CAAGTACTCTGGTGTTGATTGGAGGCAGAAGTTGGAGACTCAAAGGGGTG
CGGTTTTAGCCACTGAGTTGAAGAACAATGCTAATAAGTTGGCAAAATGG
ACTGCACAATCGTTGTTGGCGAGTGCTGATTTGATGAAATTGGGATATGT
TTCAAGGGTTCATCCACGTGATCATTTTAACCATGTGATATTGGCTGTGA
TGGGGTATAAGCCAAAGGATTTTGCCACCCAGATTAACTTGAGTACTGCA
AATATGTGGGGAATTGTGAAGAGTATTGTGGATTTGTGCATGAAGTTGAA
TGAGGGGAAGTATGTGCTTGTGAAGGATCCATCTAAGCCGCAAGTGAGGA
TCTATGAGGTTCCCCCAGATGCATTTGAGAATGATTATGTGGAGGAGCCT
TTGCCAGAGGAGGAGCAGGTTCAGCCACCTACTGAGAATGCTGAAGGAGT
GGAGGCAAATGGAGCTGCAAATGATTTGGATGATGTTGTTGTTGATGCTC
AAGCTTGATGGTCGAAGTCTTTTTTTTTCTAAAAACAGATACCTGCCAGT
GAGTGGTTTGCATCATGACAGTAGCAGACTAACAAGCTGAAAGGATTCTG
GCCCTTTTTGACCTGATGTTTTTGATGTTGTAAGTCAAGCAGCAGAATAC
TTCAATTATGATAGTGTATGGTGCCCTTTGGAGATCAGTGGTTATAATTA
GTTGCCATGACTTTTGTTGCTATGGATAATGGAACCTTGTCTACAATGGT
TTTCAAGGTTTGATGATTATTTTTTTTCCTTGTTTTGAATTTTAATTATG
ATGGATTATCT
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