FC878706

Overview
NameFC878706
Unique NameFC878706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4691 contig Ccv1_Contig4691:23..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878706 vs. ExPASy Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.310e-25
Identity = 53/124 (42.74%), Postives = 71/124 (57.26%), Query Frame = 2 
Query:  443 KRVKMS-KKAKRNELRFYRLKAKKKINSPSPEVRIRYKLEKAKRKEAWLIEKLTKFELPKAPAEAYDPEILTDEERHYLKRTGEKKKNYVQXXXXXXXXXXXLNMHLHWKKHETVKVVCKPCEP 811
            KR K+  K+A    L+F+R K KK+    + E +I  KL KA++KE  L+E + K E  ++    +DPEILT EE  Y  + G K KNYV            LNMHLHWKKH+T++VV K   P
Sbjct:  107 KRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTP 230

HSP 2 Score: 42.743 bits (99), Expect = 2.310e-25
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:  793 LQTL*AREIHEYAEVLAQLSKGIVIDINPSNTIIFYRGKDY 915
            ++T    E+ E A  LA+L+ GIV+D++  NTII YRGK+Y
Sbjct:  225 IKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNY 265
The following BLAST results are available for this feature:
BLAST of FC878706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3544_ARATH2.310e-2542.74Uncharacterized CRM domain-containing protein At3g... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA71CA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878706 ID=FC878706; Name=FC878706; organism=Citrus clementina; type=EST; length=917bp
AAACCCTAAGCTAAGCCTCATCTCTCTTTACTCTCAATTCTCATCTGCCG
TCGGCCACTCAACCGCACCACGCTGCCACCGGTCGTCATTCTCGGCCGTC
AATCGCGTCTTGTCAGTGGTCACTTTCTCGCAGCACAGCGGCTGTCGACC
TTCACTCTCGTCTTCTTCGGATTATATTTAAAGGGTCTCTTTAGTATTGT
TCTATGGTCTTGTTCACCGTGAGAACGTGATCCCATTGCTGTGTAAAGCC
TCTGCATTTGCCCAGTCTCTTCATTTCCAGCCAAGTTATGGGGCACTATC
AATACCTGTTGGAAAATGGCTACATGTTAGATACATGAGAAATGCATCAG
TTGGGATCAAGGCAGATGGTGAGACTGTAAGGTTTTCACTCAATAATCAG
TGTGATGGAAATAGGTTGCCGTTGGAAGAGAAGAAGGGCACTAAAAGAGT
GAAGATGTCGAAGAAGGCCAAGAGGAACGAACTCAGGTTCTATCGTCTTA
AGGCTAAAAAGAAGATTAATTCTCCAAGTCCAGAAGTTAGGATCAGATAC
AAACTTGAGAAGGCAAAACGTAAGGAAGCATGGCTCATTGAGAAGTTGAC
CAAATTTGAGCTTCCGAAAGCCCCGGCTGAAGCATATGATCCTGAAATTT
TAACCGACGAAGAGAGGCACTACTTAAAACGTACCGGTGAGAAAAAAAAG
AATTATGTCCAAGTTGGAAGACGGGGAGTATTTGGAGGTGTTGTTCTTAA
TATGCATCTTCATTGGAAGAAGCATGAAACTGTGAAGGTTGTTTGCAAAC
CCTGTGAGCCAGGGAAATTCATGAGTATGCTGAAGTGCTTGCTCAACTGA
GCAAAGGCATTGTGATTGACATCAATCCGAGCAATACTATAATATTTTAT
CGTGGAAAAGACTATGT
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