FC878709

Overview
NameFC878709
Unique NameFC878709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11383 contig Ccv1_Contig11383:84..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878709 vs. ExPASy Swiss-Prot
Match: Y077_HAEIN (Uncharacterized protein HI0077 OS=Haemophilus influenzae GN=HI0077 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.911e-19
Identity = 75/227 (33.04%), Postives = 111/227 (48.90%), Query Frame = 2 
Query:   35 VEAALRVLNTPDPFEKARLGDSVACRWLDGTITQPYNRSLD-----LPVPDRPARLTNVKLVSPSLMPKLGKAGSLQSRQAIVHSLAHTESWAIDLSWDIVARFGK--QEAMPR--EFFTDFVKVAQDEGRHFTLLAARLEELGSSYGALPAHDGLWDSAIATSKDLLARLAIEHCVHEARGLDVLPTTISRFRNGGDNETAKLLETVVYPEEITHCAAGVRWFRYL 688
            VE AL+  N   P EK RL + +     D  + Q     L+     +P  +  A      LV+P  +PK   A   +   A +H++AH E  AI+L  D   RFG+  QE +     F  D+++VA++E  HF+L+   L+ LG  YG   AH GLW+ A AT+ D+  R+A+   V EARGLD  P    +     D     +L+ ++  +EI H   G  W+  L
Sbjct:   12 VETALKTAN---PQEKCRLVNDL----YDNLLPQIQLIKLEDFPEIVPQDNIAAFPEKPLLVAPKDVPKRSFATE-EGYAATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGEGLAFVKDWLRVAREESTHFSLVNEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALVPRVLEARGLDATPVLQEKIAQRKDFAAVNILD-IILRDEIGHVYIGNHWYHAL 229
The following BLAST results are available for this feature:
BLAST of FC878709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y077_HAEIN6.911e-1933.04Uncharacterized protein HI0077 OS=Haemophilus infl... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA38CH08RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878709 ID=FC878709; Name=FC878709; organism=Citrus clementina; type=EST; length=860bp
CCGAGACTCGGTAGTAATGGAAAGCAAAACCCTGGTAGAAGCGGCGCTTA
GAGTTCTAAACACACCCGACCCTTTCGAGAAAGCCCGACTCGGCGACTCG
GTTGCGTGCAGATGGCTCGACGGAACCATCACTCAGCCTTACAACCGTTC
TCTGGACCTTCCCGTACCTGACCGCCCAGCTAGGCTCACCAACGTTAAAT
TGGTTTCGCCAAGTTTAATGCCGAAGCTTGGTAAAGCTGGGAGCTTGCAG
AGTAGGCAGGCTATTGTGCATAGCCTTGCGCACACTGAGAGCTGGGCCAT
TGATTTGTCTTGGGATATAGTTGCTCGTTTTGGTAAGCAAGAAGCGATGC
CAAGGGAATTCTTCACAGATTTTGTGAAGGTGGCCCAAGACGAAGGCCGA
CACTTCACTCTCCTTGCAGCACGATTGGAGGAACTAGGTTCTTCTTATGG
AGCTTTGCCAGCTCATGATGGCCTCTGGGACTCGGCCATTGCTACATCCA
AGGACCTGCTGGCGCGTTTGGCAATAGAGCATTGTGTCCATGAGGCCAGG
GGACTCGATGTGCTGCCCACCACCATCTCTCGTTTCCGCAATGGAGGTGA
TAATGAGACCGCAAAGTTACTAGAAACGGTGGTTTACCCAGAAGAAATTA
CACATTGTGCTGCTGGAGTAAGGTGGTTTAGATATCTTTGCTTGAGGTCT
AGGGATCCGGCTTTACTTCGAGACAGCTTGGCACCTCCTGAAAGTGAAGC
AGGAGAGAACGTATGTACAATAGAAGAAAATGAAGAGGTTATTCGGAAGT
TTCATGCCATAGTGAGAACACACTTTAGGGGGGCCATTGAAGCCACCTTT
TAATGANGTA
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