FC878710

Overview
NameFC878710
Unique NameFC878710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878710 vs. ExPASy Swiss-Prot
Match: U503A_ARATH (UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.412e-24
Identity = 62/126 (49.21%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:  130 STSCDRHPDEHFTGFCPSCLCERLAVLDHXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXX---------ELRRTKSFSASKN-EGFSGVFEPQRKSCDVRVRNTLWSLFTQDDERN 477
            STSC+RHP+E FTGFCPSCLCERL+VLD                                                   ELRRTKSFSASKN EGFSGVFEPQR+SCDVR+R++LW+LF+QD++RN
Sbjct:   28 STSCNRHPEERFTGFCPSCLCERLSVLDQTNNGGSSSSSKKPPTISAAALKALFKPSGNNGVGGVNTNGNGRVKPGFFPELRRTKSFSASKNNEGFSGVFEPQRRSCDVRLRSSLWNLFSQDEQRN 153
The following BLAST results are available for this feature:
BLAST of FC878710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U503A_ARATH1.412e-2449.21UPF0503 protein At3g09070, chloroplastic OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA71CA06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878710 ID=FC878710; Name=FC878710; organism=Citrus clementina; type=EST; length=850bp
ACATTCTCTCTCACTAAATAACAGCATTATGAGCAGAGCCAGAGCTGGCA
TTACAAAACGACGCCGGTTATGAATCCAGCAACCGACCCACCACCACCAC
CACAGCCTCCACTTCAGCCCCACCGTCCTTCCACTTCCTGCGACCGTCAT
CCCGACGAGCATTTCACCGGCTTTTGCCCCTCATGCCTTTGCGAGCGTCT
GGCCGTTTTAGATCACTCTTCTTCAGCGTCAGCTTCCTCGTCACGCAAAC
CCAACGCCGCCGCTGCACTTAAGTCCATCTTCAAGCCCGGCGGAGGCGGA
GGGGGAGCTGGGTCTTCCTCGAAACCCCCTTTTTTTCCGGAGCTGCGTCG
TACGAAGTCGTTTTCGGCGTCGAAGAACGAGGGCTTTAGCGGCGTGTTTG
AGCCTCAGAGGAAATCTTGTGACGTTAGGGTTAGGAATACTCTTTGGTCG
CTTTTTACTCAGGACGACGAGAGAAACCCTTATAAGAGGGAACAAAACAG
AGAGACTGTCGAAGCAACTGAGAGTCTCAGTCGAAATTTGGGGTCTTCGG
CGAGGCCCAGCTTTCAAGGTCCCGTTTTGGAGTCCCAAGAGGAAGGCAAA
AGCGAGAGCGAAGGCCAAAACGAAAACGAAATCGATAAAGAAGGTAATGC
TGATGACTGCATTAGGGTTTTAGACGAACCCATTGTAGGAATTGGATCGT
CGAGTGATAAAGTGGAGGAAATTATTGAGGAGGAAGAAGAAGTAGAGGAG
GAGGAAATAGTGGAAGTGAAGCAAGAACAAGTTTTTGAAGAGGAATTGAA
GCCAATGAAAGACCACATAGATCTTGATTCTCAAACGAAGAAAGCTTCTG
back to top