FC878715

Overview
NameFC878715
Unique NameFC878715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4776 contig Ccv1_Contig4776:64..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.639e-92
Identity = 178/269 (66.17%), Postives = 201/269 (74.72%), Query Frame = 1
Query:   79 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP--PVPQLSTCEEQPG-NREGEAQASSIDAMVAGAGEGLPAP---VGDRIIEEVQEDLPASMNPHPVVAG-TSREVPANASGVQLQPKPETRGQKP 864
            MA++RYN KNPAVKRILQEVKEMQ+NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA+YPFKPPSFMLLTPNGRFET TKICLSISN+HPEHWQPSWSVRTALVALIAFMPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA   P P    C + P    E  +Q    +A+       +      V D+IIEE  E +  + +  P  A   + EV   AS    Q       QKP
Sbjct:    1 MADERYNRKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPKPLPLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAEAVNTAASVVPAAAPLPAVEVVVKASVSGEQRMARRAAQKP 269          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.959e-53
Identity = 95/146 (65.07%), Postives = 119/146 (81.51%), Query Frame = 1
Query:   85 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 522
            E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHGRI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++
Sbjct:    2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQD 146          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.959e-53
Identity = 95/146 (65.07%), Postives = 119/146 (81.51%), Query Frame = 1
Query:   85 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 522
            E RYNLK+PAVKR+++E  E++ +P+D + + PLE+N+FEW F +RGP D++F+GG+YHGRI LP EYP KPPS +LLT NGRFE   KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++
Sbjct:    2 ETRYNLKSPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQD 146          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.906e-32
Identity = 62/135 (45.93%), Postives = 90/135 (66.67%), Query Frame = 1
Query:  112 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 516
            A KR+ +E K M  NP    ++ P EENI EW + I GP DT ++GG YHG +  P++YP+KPP+  ++TPNGRF+  T++CLS+S++HP+ W P WSV T L  L++FM T      GS+   ++E++ LA KS
Sbjct:    6 AQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFM-TGDESTTGSITTTQQEKKILAKKS 139          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.595e-31
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 1
Query:  112 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 522
            A KR+ +E K M  NP    ++ P E+NI  W + I GP +T +E G YHG +  P +YPF PP+  +LTPNGRF   T++CLS+S++HP+ W PSWSV T L  L++FM T+   ++G+++     +R  A KS+E
Sbjct:    6 AYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTPNGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTD-ESSIGTMESTDSTKRKYAAKSKE 141          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.133e-31
Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  112 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 516
            A KR+ +E K M  NP    ++ P E+NI EW + I GP DT ++GG YHG +  P++YP+KPP+  ++TPNGRF+  T++CLS+S++HP+ W P WSV T L  L++FM T+     GS+     +++ LA  S
Sbjct:    6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFM-TSDEATTGSITTSDHQKKTLARNS 139          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.009e-31
Identity = 60/136 (44.12%), Postives = 89/136 (65.44%), Query Frame = 1
Query:  112 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSR 519
            A KR+ +E K + +NP    ++ P E+NI EW + I GP  T +E G YHG +  P++YPF PP+  ++TPNGRF+  T++CLS+S++HPE W P+WSV T L  L++FM T      GS+    +++R LA KS+
Sbjct:    6 ANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITPNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFM-TGDEQTTGSVSTSDKDKRTLAKKSK 140          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.330e-30
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1
Query:  118 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 522
            KR+ +E K +  NP     + P +ENI EW + I GP  T FE G YHG ++ P+EYPFKPPS  ++TPNGRF   T++CLS+S++HP+ W P+WSV T L  L++FM T      GS+      ++ LA  S+E
Sbjct:    8 KRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITPNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFM-TGDESTTGSITTSDNVKKRLARSSKE 141          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.975e-30
Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = 1
Query:  112 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALA 507
            A KR+++E   +Q NP +   + P  ENI EW + I GP DT +EGG YHG +  P +YPFKPP+  ++TP+GRF+T T++CLS S+ HP+ W PSW V T LV L++FM T+     G +   +  RR  A
Sbjct:    6 AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFM-TSDEITTGGIVTSESTRRTYA 136          
BLAST of FC878715 vs. ExPASy Swiss-Prot
Match: UB2JL_DICDI (Ubiquitin-conjugating enzyme E2 J2-like OS=Dictyostelium discoideum GN=DDB_G0294380 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.975e-30
Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   79 MAEDRYNLKNPAVK----RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 522
            M+E   ++ +P  K    R+ +E +E+  NP ++ +  P   NI EW + I G  +T +EGG+Y+G++     YP  PPS ++ TP+GRFETQ ++CLSIS++HPE W PSWS  + L+ L++FM  N   A GS+    +E+R LA KS +
Sbjct:    1 MSEHNSDIVHPPTKDCITRLKREFQEISKNPIENILVTPSPSNILEWHYVILGASNTPYEGGVYYGQLIFKYNYPLSPPSILMTTPSGRFETQKRLCLSISDYHPESWSPSWSTSSILLGLLSFMSDNEVTA-GSIVTTNDEKRILATKSMD 151          
The following BLAST results are available for this feature:
BLAST of FC878715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBC32_ARATH1.639e-9266.17Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UB2J1_MOUSE1.959e-5365.07Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN1.959e-5365.07Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
UBC6_CANGA1.906e-3245.93Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC6_ASHGO3.595e-3143.80Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC6_YEAST6.133e-3143.70Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC6_KLULA8.009e-3144.12Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_DEBHA2.330e-3045.19Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UBC6_SCHPO3.975e-3045.45Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
UB2JL_DICDI3.975e-3040.79Ubiquitin-conjugating enzyme E2 J2-like OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA26BA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA26BA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878715 ID=FC878715; Name=FC878715; organism=Citrus clementina; type=EST; length=867bp
ACTTTTGTCTGCTCGTTCGCATACAAAGTCCTGATAGGACGGTGGACGTG
AACCGATCGAAATCAGATCTGAAATCCAATGGCGGAAGACAGGTACAATT
TGAAAAATCCAGCGGTGAAGAGAATCCTACAGGAGGTCAAAGAGATGCAA
TCAAATCCGTCAGATGATTTCATGAGCCTCCCTCTCGAGGAGAATATATT
TGAATGGCAATTTGCGATCAGGGGACCGGGTGATACTGAATTTGAAGGTG
GGATTTATCATGGTCGGATTCAGTTACCTGCAGAATACCCATTCAAGCCT
CCTTCATTTATGCTCTTAACACCAAATGGGCGTTTTGAAACTCAGACCAA
AATATGCTTAAGCATTTCGAATCATCATCCGGAGCACTGGCAACCATCTT
GGAGTGTGAGGACTGCTCTTGTAGCACTAATTGCTTTCATGCCCACCAAT
CCAAATGGTGCTTTGGGCTCACTAGATTATAAGAAGGAAGAGAGGCGTGC
TCTGGCCATCAAATCTCGTGAAGCTGCCCCAAAATTTGGGACTCCTGAAC
GTCAAAAACTCATTGATGAGATCCATGAATATATGTTAAGCAAGGCACCC
CCTGTCCCTCAGCTCAGCACCTGTGAAGAACAGCCTGGCAACAGGGAGGG
TGAAGCACAGGCAAGTTCCATAGACGCCATGGTTGCGGGTGCCGGGGAAG
GGCTCCCAGCCCCAGTAGGTGATAGGATTATTGAAGAAGTTCAGGAGGAT
CTTCCTGCCAGCATGAATCCTCACCCCGTAGTGGCTGGAACATCAAGAGA
GGTTCCTGCCAACGCCTCTGGAGTCCAGCTTCAGCCAAAACCGGAGACTA
GGGGTCAAAAACCTGCT
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