FC878717

Overview
NameFC878717
Unique NameFC878717
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8074 contig Ccv1_Contig8074:32..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878717 vs. ExPASy Swiss-Prot
Match: Y1998_PARUW (Uncharacterized RNA methyltransferase pc1998 OS=Protochlamydia amoebophila (strain UWE25) GN=pc1998 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.403e-32
Identity = 75/195 (38.46%), Postives = 104/195 (53.33%), Query Frame = 1 
Query:  265 ALQCPHFQSCSGCTHDFNLHRPIIVDEATDFFKSIGLLNFTFDSCRLYGWRCRAKLAVRGTTTSPLIGLYHEGTHNVMDIPHCKAHHPRINAAVELLRQGIKEINVEPYDEDDRTGDLRYVQMAVTTYNTSLPASDRYRNGKVHITLVCNSRNEKSPNSDKLQSLAEFLWRNGASRSREQYIHSVWANFQTSTNN 849
            AL CPHF SC+GC+H   +  PI  +   +F ++   LN       L GWRCRAKLAVRGT  +P+IGL+ +G+H  ++IP C  HHPRIN AV +++  ++   + PY E  + GDLRY+Q  V              +GKV I  V N ++  SP S   + L   L    A  +   + HS+W NF     N
Sbjct:    9 ALSCPHFDSCAGCSHQLFVEPPIWREVIENFKET---LNPILHQGTLTGWRCRAKLAVRGTKQNPIIGLFKKGSHEALNIPFCLVHHPRINQAVTMIQNWMERHQLNPYQEHSQAGDLRYLQFVV-----------ERASGKVQIVFVLNFKDFSSPESQIWRKLLLEL----AQETTNAFWHSIWVNFNPHATN 185
The following BLAST results are available for this feature:
BLAST of FC878717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1998_PARUW2.403e-3238.46Uncharacterized RNA methyltransferase pc1998 OS=Pr... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA71CA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878717 ID=FC878717; Name=FC878717; organism=Citrus clementina; type=EST; length=850bp
TCGAAATTCAACCGACCCGGTGAGCCTACCTCCTGATATTTTAGTTATCG
CACTTTATCCATTCCCGCCACAGGGAAACGACTGCTGAGCTTGAACTGTA
CTTACTAATCACAAATGCCTGCGTGCCTCCTCTCCGCTCGTCCTCCCTCT
CCGGTCATAACCTGCCGTGTGTCACTCGGAGCAGTGCGCAACCCTCCACC
CCCAGCTCCTCCTTCTTCTCTCCCTCTAGACCCTCCTGCGGCCAACCTCC
CATCTCTAACTTGCGCCCTACAGTGCCCTCACTTCCAATCCTGCTCTGGT
TGTACGCACGATTTCAATCTCCACCGTCCGATCATCGTCGACGAGGCTAC
TGATTTTTTCAAGAGTATTGGTCTTTTAAATTTCACTTTCGATAGCTGTA
GACTGTACGGATGGAGGTGTCGAGCCAAATTGGCTGTCCGCGGCACGACG
ACAAGCCCTCTGATTGGACTGTATCATGAGGGGACTCATAATGTAATGGA
TATTCCTCACTGTAAAGCCCATCATCCTCGTATTAATGCTGCTGTTGAGC
TGTTGAGACAAGGAATTAAAGAGATAAATGTTGAGCCATATGATGAGGAT
GATAGGACAGGTGATTTGCGATATGTTCAGATGGCTGTGACCACTTACAA
CACATCCCTTCCCGCCTCGGACAGATACAGAAATGGAAAAGTACACATTA
CTTTAGTTTGTAATTCAAGAAATGAAAAGTCCCCCAATTCGGACAAATTA
CAGTCTTTAGCCGAGTTTTTATGGAGAAATGGTGCTTCAAGGAGCCGTGA
GCAGTACATTCACTCTGTATGGGCAAACTTTCAGACATCAACTAATAATG
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