FC878720

Overview
NameFC878720
Unique NameFC878720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6125 contig Ccv1_Contig6125:12..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878720 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 62/241 (25.73%), Postives = 105/241 (43.57%), Query Frame = 2
Query:  188 ESVLEMLAKDQARLQFLSSLAVARKSV-VPIASGRQITQSPTYIVRAKIGTPAQTLLMAMDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG-SSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPI--GQPKRIKYTPLLKNPRRSSLYYVNLLAIXVG 889
            E +   + + + R++ ++++  +   +  P+ +G        Y++   IGTP  +    MDT +D  W    PCT C    + +FN   S++F  L C++  C+ +P+ TC    C +   YG  ST    ++ +T +  T  VP   FGC +   G                   +    L    FSYC+ S+ + S S +L LG    G P+    T L+ +    + YY+ L  I VG
Sbjct:   59 ELIKRAIKRGERRMRSINAMLQSSSGIETPVYAG-----DGEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETSSVPNIAFGCGEDNQG--FGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTSYGSSSPS-TLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVG 291          
BLAST of FC878720 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.698e-16
Identity = 56/203 (27.59%), Postives = 89/203 (43.84%), Query Frame = 2
Query:  311 YIVRAKIGTPAQTLLMAMDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG-SSTIAANLSQDTISLATDIVPGYTFGCIQKATGNSVPPQXXXXXXXXXXXXXAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPI------GQPKRIKYTPLLKNPRRSSLYYVNLLAIXVG 889
            Y++   IGTPAQ     MDT +D  W    PCT C   S+ +FN   S++F  L C +  C+ + +PTC    C +   YG  S    ++  +T++  +  +P  TFGC +   G                   +    L  + FSYC+    + S   +L LG +      G P     T L+++ +  + YY+ L  + VG
Sbjct:   95 YLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQG--FGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCMTPIGS-STPSNLLLGSLANSVTAGSPN----TTLIQSSQIPTFYYITLNGLSVG 290          
The following BLAST results are available for this feature:
BLAST of FC878720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR1.403e-1725.73Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR7.698e-1627.59Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA83DH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878720 ID=FC878720; Name=FC878720; organism=Citrus clementina; type=EST; length=899bp
AAAAAAAAAAAAAATCAAAGCCATGAAACCTCAACTAGTCTTCTTTCTAG
CCTTCCTTTTCTTGTTCTCCCTTTCTGAAGGCCTAAACCCTATATGTGAC
ACCCAAGACCATAGCTCAACTCTCCAAGTTTTTCATGTTTTCAGCCCATG
CTCTCCTTTTAAGCCGTCAAAGCCACTTTCATGGGAAGAAAGTGTGCTCG
AAATGCTGGCCAAAGATCAGGCACGGCTGCAGTTCTTGTCCAGCCTTGCT
GTCGCCAGGAAATCTGTTGTGCCCATAGCCTCTGGCAGGCAGATCACCCA
AAGCCCTACTTATATTGTTAGGGCAAAAATTGGGACACCGGCACAAACCT
TGCTCATGGCCATGGATACTAGCAATGATGCTGCTTGGGTTCCATGCACT
GGCTGTGTTGGCTGCTCTTCCACCGTTTTTAATTCTGCTCAATCCACCAC
ATTCAAAAACCTTGGTTGCCAAGCTGCTCAATGCAAGCAGGTACCCAATC
CCACCTGCGGGGGTGGCGCGTGTGCATTCAATTTGACCTACGGCAGCTCC
ACCATTGCCGCAAACCTCTCACAGGACACTATCTCCCTGGCCACTGATAT
AGTCCCTGGTTACACCTTCGGCTGCATCCAAAAGGCCACGGGCAACTCGG
TGCCGCCCCAAGGCCTGTTGGGCCTGGGTCGTGGCTCATTATCCCTTTTG
GCACAAACACAGAACCTCTATCAGTCCACTTTTTCTTACTGTTTGCCCAG
CTTCAAGGCACTTAGCTTTTCTGGGTCATTAAGATTAGGACCCATTGGTC
AGCCCAAGCGGATTAAGTATACACCATTGCTTAAAAACCCAAGAAGATCA
TCACTTTACTATGTTAATTTGTTGGCCATTANGGTTGGCAGAAGAGTTG
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