FC878721

Overview
NameFC878721
Unique NameFC878721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10882 contig Ccv1_Contig10882:166..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38A7_DANRE (Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.226e-18
Identity = 71/283 (25.09%), Postives = 127/283 (44.88%), Query Frame = 3
Query:   48 PSSKMEKRPSVS--GAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDISVDILMRY-THAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS--DMITAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            PS   + R   S  GAVF V  + +GAG+++ PA F + G I A V + +      I+  +++ Y +     STY  V+R   G+A  V  +L + +   G         GD L   +  G+++    ++    HW+  R                  + +G  +++S +SV +   +V I  ++ +  +W  K  +P ++P      S+ D+F A+P I   F  H +  P+     KP        V IS+ +C  +Y    + G+L FG S+  D+L+++
Sbjct:   39 PSQSDDSRGGTSSLGAVFIVVNAALGAGLLNFPAAFNMAGGITAGVTLQMCMMAFIITGLVILAYCSQVSNESTYQEVVRAVCGKALGVICELAIAVYTFGTCIAFLIIIGDQL--DKLIGAIN-NESEKEISLHWYTDRKFTITLTSVLIILPLSIPKEIGFQKYASTLSV-IGTWYVTI--IVIVKYIWPSKDVSPGIIPV--RPASWTDVFNAMPTICFGFQCHVSSVPVFNSMKKPEIRPWWGVVTISMIICLFVYTGTGVCGFLSFGSSVSQDVLMSY 313          
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38A7_BOVIN (Putative sodium-coupled neutral amino acid transporter 7 OS=Bos taurus GN=SLC38A7 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.344e-14
Identity = 68/302 (22.52%), Postives = 125/302 (41.39%), Query Frame = 3
Query:    3 AVQMSPAAGLQAPLLPSSKMEKRPSVSGAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDISVDILMRY-THAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGD------VLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMI--TAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            +V ++P +  +AP  P        S  GA+F V  + +GAG+++ PA F   G + A + + +   +  IS  +++ Y + A    TY  V+    G+   V  ++ +     G         GD       +  K+PEG           G  W+  R                  R +G  +++S +SV+      AI   + I  +W  K  TP  +  L+   S+  +F A+P I   F  H +  P+     +P        V  ++ +  A+Y    + G+L FG+++  D+L+++
Sbjct:   30 SVDIAPKSEGEAP--PGGVGGGTTSTLGAIFIVVNACLGAGLLNFPAAFSTAGGVAAGITLQMAMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTGVLCEVAIATYTFGTCIAFLIIIGDQQDKIIAVMAKEPEGP---------GGSPWYTDRKFTISLTAFLFILPLSIPREIGFQKYASFLSVVGTWYVTAI---IIIKYIWPDKEMTPADI--LNRPASWIAVFNAMPTICFGFQCHVSSVPVFNSMRQPEVKTWGGVVTAAMVIALAVYMGTGICGFLTFGDAVDPDVLLSY 315          
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38A7_PONAB (Putative sodium-coupled neutral amino acid transporter 7 OS=Pongo abelii GN=SLC38A7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 69/304 (22.70%), Postives = 124/304 (40.79%), Query Frame = 3
Query:   30 LQAPLL---PSSKMEKRP--------SVSGAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDISVDILMRY-THAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGD------VLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMI--TAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            LQ+P +   P S+ E  P        S  GA+F V  + +GAG+++ PA F   G + A + + +   +  IS  +++ Y + A    TY  V+    G+   V  ++ + +   G         GD       +  K+PEG+             W+  R                  R +G  +++S +SV+      AI   + I  +W  K  TP  +  L    S+  +F A+P I   F  H +  P+     +P        V  ++ +  A+Y    + G+L FG ++  D+L+++
Sbjct:   26 LQSPCVDTAPKSEWEASPGGPDRGTTSTLGAIFIVVNACLGAGLLNFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTGVLCEVAIAVYTFGTCIAFLIIIGDQQDKIIAVMAKEPEGA----------SGPWYTDRKFTISLTAFLFILPLSIPREIGFQKYASFLSVVGTWYVTAI---VIIKYIWPDKEMTPGNI--LTRPASWMAVFNAMPTICFGFQCHVSSVPVFNSMQQPEVKTWGGVVTAAMVIALAVYMGTGICGFLTFGAAVDPDVLLSY 314          
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38A7_HUMAN (Putative sodium-coupled neutral amino acid transporter 7 OS=Homo sapiens GN=SLC38A7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 69/304 (22.70%), Postives = 124/304 (40.79%), Query Frame = 3
Query:   30 LQAPLL---PSSKMEKRP--------SVSGAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDISVDILMRY-THAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGD------VLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMI--TAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            LQ+P +   P S+ E  P        S  GA+F V  + +GAG+++ PA F   G + A + + +   +  IS  +++ Y + A    TY  V+    G+   V  ++ + +   G         GD       +  K+PEG+             W+  R                  R +G  +++S +SV+      AI   + I  +W  K  TP  +  L    S+  +F A+P I   F  H +  P+     +P        V  ++ +  A+Y    + G+L FG ++  D+L+++
Sbjct:   26 LQSPCVDTAPKSEWEASPGGLDRGTTSTLGAIFIVVNACLGAGLLNFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTGVLCEVAIAVYTFGTCIAFLIIIGDQQDKIIAVMAKEPEGA----------SGPWYTDRKFTISLTAFLFILPLSIPREIGFQKYASFLSVVGTWYVTAI---VIIKYIWPDKEMTPGNI--LTRPASWMAVFNAMPTICFGFQCHVSSVPVFNSMQQPEVKTWGGVVTAAMVIALAVYMGTGICGFLTFGAAVDPDVLLSY 314          
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38A7_XENLA (Putative sodium-coupled neutral amino acid transporter 7 OS=Xenopus laevis GN=slc38a7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 71/293 (24.23%), Postives = 121/293 (41.30%), Query Frame = 3
Query:   30 LQAPLLPSSKMEKR----PSVSGAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDIS-VDILMRYTHAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS----DMITAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            LQ+P + +S   +R     S +GAVF V  + +GAG+++ PA F   G I A + + ++  L  IS + IL     A    TY  V+R   GR   V  ++ + +   G         GD L  K     +H           W+  R                  R +   R++S +SV L   +V +  V+ +  +W   +     +    +  S+  +F AVP I   +  H +  P+     +        I  + + +ALC  +Y    + G+LLFG  +  D+L++F
Sbjct:   23 LQSPSVGTSPELRRLAGGTSPAGAVFIVVNAALGAGLLNFPAAFNAAGGITAAISLQLVLLLFIISGLVILAHCADACSERTYQEVVRGVCGRTAGVLCEVLIAVYTFGTCIAFFIIIGDQL-DKLLGAMMHTTAESP---VPWYADRKFTISVTGVLLILPLSLPREISVQRYASFLSV-LGTCYVTV--VVVVRCIWPDTTIPSHEISSSSS--SWLAVFNAVPTICFGYQCHVSSVPVYGSMQQQDIRRWGYIVTIAMFIALC--VYTGTGVCGFLLFGSDVDQDVLLSF 304          
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38A7_MOUSE (Putative sodium-coupled neutral amino acid transporter 7 OS=Mus musculus GN=Slc38a7 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 68/304 (22.37%), Postives = 124/304 (40.79%), Query Frame = 3
Query:   30 LQAP---LLPSSKMEKRP--------SVSGAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDISVDILMRY-THAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGD------VLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMI--TAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            LQ+P   ++P S+ E  P        S  GAVF V  + +GAG+++ PA F   G + A + + +   +  IS  +++ Y + A    TY  V+    G+   V  ++ + +   G         GD       +  K+P+G+          G  W+  R                  + +G  +++S +SV+      AI   + I  +W  K   P  +  L    S+  +F A+P I   F  H +  P+     +P        V  ++ +  A+Y    + G+L FG ++  D+L ++
Sbjct:   26 LQSPCVDVVPKSEGEASPGDPDSGTTSTLGAVFIVVNACLGAGLLNFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTGVLCEVAIAVYTFGTCIAFLIIIGDQQDKIIAVMSKEPDGA---------SGSPWYTDRKFTISLTAFLFILPLSIPKEIGFQKYASFLSVVGTWYVTAI---IIIKYIWPDKEMRPGDI--LTRPASWMAVFNAMPTICFGFQCHVSSVPVFNSMRQPEVKTWGGVVTAAMVIALAVYMGTGICGFLTFGAAVDPDVLRSY 315          
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38A7_RAT (Putative sodium-coupled neutral amino acid transporter 7 OS=Rattus norvegicus GN=Slc38a7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 61/278 (21.94%), Postives = 114/278 (41.01%), Query Frame = 3
Query:   75 SVSGAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDISVDILMRY-THAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGD------VLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMI--TAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            S  GAVF V  + +GAG+++ PA F   G + A + + +   +  IS  +++ Y + A    TY  V+    G+   V  ++ + +   G         GD       +  K+P+G+          G  W+  R                  + +G  +++S++SV+      AI   + I  +W  K   P  +  L    S+  +F A+P I   F  H +  P+     +P        V  ++ +  A+Y    + G+L FG ++  D+L ++
Sbjct:   52 STLGAVFIVVNACLGAGLLNFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTGVLCEIAIAVYTFGTCIAFLIIIGDQQDKIIAVMAKEPDGA---------SGSPWYTDRKFTISLTAFLFILPLSIPKEIGFQKYASSLSVVGTWYVTAI---VIIKYIWPDKEMRPGDI--LTRPASWMAVFNAMPTICFGFQCHVSSVPVFNSMRQPQVKTWGGVVTAAMVIALAVYMGTGICGFLTFGAAVDPDVLRSY 315          
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38AA_PONAB (Putative sodium-coupled neutral amino acid transporter 10 OS=Pongo abelii GN=SLC38A10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 61/271 (22.51%), Postives = 120/271 (44.28%), Query Frame = 3
Query:   84 GAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDISVDILMRYTHAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRR--VGSLRFSSAISVLLAVIFVAICSVMAI-YAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS--DMITAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            G + N+  SI+G  ++++P  FK  G++   +L+V  + +T  S   L++     +  TYAG+   ++G+AG + V+  ++   LG         GD+       GS     L   FGF    T                   +R  + S++  SA+++L   +F+ +  + ++ + ++ G+        +  ++V +  +F  +P+   +F     V P     D+PS   M +    SL +    Y  V  FGY+ F E+   ++L++F
Sbjct:   10 GLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDL-------GSNFFARL---FGFQVGGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSGQ------WLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHF 264          
BLAST of FC878721 vs. ExPASy Swiss-Prot
Match: S38AA_HUMAN (Putative sodium-coupled neutral amino acid transporter 10 OS=Homo sapiens GN=SLC38A10 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 61/271 (22.51%), Postives = 120/271 (44.28%), Query Frame = 3
Query:   84 GAVFNVATSIIGAGIMSIPATFKVLGVIPAFVLIVIIACLTDISVDILMRYTHAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRR--VGSLRFSSAISVLLAVIFVAICSVMAI-YAVWEGKSKTPKLLPQLDNHVSFFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS--DMITAVRISLALCAAIYFSVXLFGYLLFGESIMSDILINF 881
            G + N+  SI+G  ++++P  FK  G++   +L+V  + +T  S   L++     +  TYAG+   ++G+AG + V+  ++   LG         GD+       GS     L   FGF    T                   +R  + S++  SA+++L   +F+ +  + ++ + ++ G+        +  ++V +  +F  +P+   +F     V P     D+PS   M +    SL +    Y  V  FGY+ F E+   ++L++F
Sbjct:   10 GLITNIVNSIVGVSVLTMPFCFKQCGIVLGALLLVFCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGTCIAFYVVIGDL-------GSNFFARL---FGFQVGGTFRMFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLFYTVFMFVIVLSSLKHGLFSGQ------WLRRVSYVRWEGVFRCIPIFGMSFACQSQVLPTYDSLDEPSVKTMSSIFASSLNVVTTFYVMVGFFGYVSFTEATAGNVLMHF 264          
The following BLAST results are available for this feature:
BLAST of FC878721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
S38A7_DANRE2.226e-1825.09Putative sodium-coupled neutral amino acid transpo... [more]
S38A7_BOVIN4.344e-1422.52Putative sodium-coupled neutral amino acid transpo... [more]
S38A7_PONAB1.264e-1322.70Putative sodium-coupled neutral amino acid transpo... [more]
S38A7_HUMAN1.264e-1322.70Putative sodium-coupled neutral amino acid transpo... [more]
S38A7_XENLA4.066e-1224.23Putative sodium-coupled neutral amino acid transpo... [more]
S38A7_MOUSE4.066e-1222.37Putative sodium-coupled neutral amino acid transpo... [more]
S38A7_RAT5.311e-1221.94Putative sodium-coupled neutral amino acid transpo... [more]
S38AA_PONAB9.058e-1222.51Putative sodium-coupled neutral amino acid transpo... [more]
S38AA_HUMAN9.058e-1222.51Putative sodium-coupled neutral amino acid transpo... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA6DG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878721 ID=FC878721; Name=FC878721; organism=Citrus clementina; type=EST; length=922bp
ACGCGGTACAGATGTCGCCGGCTGCTGGATTACAAGCACCGCTGCTGCCG
AGCAGCAAGATGGAGAAGCGGCCATCGGTATCTGGTGCCGTGTTCAATGT
TGCAACTAGTATTATTGGAGCTGGGATTATGTCAATTCCGGCCACCTTTA
AGGTCCTGGGCGTGATACCAGCTTTTGTGCTGATTGTGATCATTGCCTGC
CTAACTGACATCTCCGTGGATATTCTGATGAGATATACACATGCCGGTGA
GACGTCGACGTATGCCGGTGTCATGAGAGAGTCGTTTGGACGTGCAGGAT
CAGTTGCAGTTCAACTCTGTGTCATGATCACTAACCTTGGATGCTTGATC
ATATTTTTGATTATTATTGGTGATGTCCTGTGTGGCAAGCAGCCCGAAGG
ATCAGTTCATTTGGGTGTGTTACAAGAATGGTTCGGCTTTCATTGGTGGA
ATACGCGAGTCTTCGCTCTGCTATTCGTTATGGTGTTTGTGATGCTTCCA
TTAGCCTTGTTCAGGCGTGTGGGCTCATTGCGTTTCAGTTCTGCAATTTC
TGTGCTGCTTGCTGTGATATTTGTTGCTATATGCTCGGTTATGGCAATAT
ATGCTGTCTGGGAGGGCAAATCGAAAACCCCAAAACTACTACCGCAGTTG
GACAACCATGTGTCATTTTTCGATCTTTTCACTGCTGTCCCAGTTATTGT
TACAGCTTTCACTTTTCATTTTAATGTTCATCCGATAGGTTTTGAGTTTG
ACAAGCCTTCTGACATGATCACAGCAGTAAGAATTTCATTAGCACTATGT
GCCGCCATCTACTTTTCCGTANGCCTGTTTGGGTACCTTCTGTTTGGGGA
GTCAATCATGTCTGACATCCTCATAAATTTCGATCAGAGTTCTGGTTCAG
CAATTAGCTCATTACTCAATGA
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