FC878722

Overview
NameFC878722
Unique NameFC878722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13045 contig Ccv1_Contig13045:25..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BXL2_ARATH (Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1)

HSP 1 Score: 456.062 bits (1172), Expect = 1.137e-127
Identity = 214/252 (84.92%), Postives = 231/252 (91.67%), Query Frame = 3
Query:   81 REPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIR 836
            RE FACD KDA T TL FCQ+S+PIP+RV DLIGRL+L EKV LL + AAA+PRLGIKGYEWWSEALHGVSNVGPGTKFGG +P ATSFPQVITT +SFNA+LWE+IGRVVS+EARAMYNGG  GLTYWSPNVNI RDPRWGRGQETPGEDPV++GKYAASYVRGLQG+D  RLKVAA CKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCV EG VAS+MCSYNQVNGVPTCADPN+LK+TIR
Sbjct:   27 RETFACDTKDAATATLRFCQLSVPIPERVRDLIGRLTLAEKVSLLGNTAAAIPRLGIKGYEWWSEALHGVSNVGPGTKFGGVYPAATSFPQVITTVASFNASLWESIGRVVSNEARAMYNGGVGGLTYWSPNVNILRDPRWGRGQETPGEDPVVAGKYAASYVRGLQGNDRSRLKVAACCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVKEGNVASIMCSYNQVNGVPTCADPNLLKKTIR 278          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BXL1_ARATH (Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 3.666e-118
Identity = 198/253 (78.26%), Postives = 225/253 (88.93%), Query Frame = 3
Query:   81 REPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQG-SDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIR 836
            R  FACDP +  TRTL FC+ ++PI  RV DL+GRL+LQEK++ L++ AAAVPRLGI GYEWWSEALHG+S+VGPG KFGG FPGATSFPQVITTA+SFN +LWE IGRVVSDEARAMYNGG AGLTYWSPNVNI RDPRWGRGQETPGEDP+++ KYAASYVRGLQG + G+RLKVAA CKH+TAYDLDNWNGVDRFHFNAKV++QD+EDT++VPF+ CV EGKVASVMCSYNQVNG PTCAD N+LK TIR
Sbjct:   32 RPLFACDPANGLTRTLRFCRANVPIHVRVQDLLGRLTLQEKIRNLVNNAAAVPRLGIGGYEWWSEALHGISDVGPGAKFGGAFPGATSFPQVITTAASFNQSLWEEIGRVVSDEARAMYNGGVAGLTYWSPNVNILRDPRWGRGQETPGEDPIVAAKYAASYVRGLQGTAAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVTQQDLEDTYNVPFKSCVYEGKVASVMCSYNQVNGKPTCADENLLKNTIR 284          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BXL5_ARATH (Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.771e-96
Identity = 164/253 (64.82%), Postives = 194/253 (76.68%), Query Frame = 3
Query:   90 FACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQ----GSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIR 836
            FACD     T    FC VSL    R  DL+ RLSL+EKV+ L++ A  VPRLG+  YEWWSEALHGVS+VGPG  F G  PGATSFP  I TA+SFN +LW  +G VVS EARAM+N G AGLTYWSPNVN+FRDPRWGRGQETPGEDP++  KYA +YV+GLQ         RLKV++ CKH+TAYDLDNW G+DRFHF+AKV+KQD+EDT+  PF+ CV EG V+SVMCSYN+VNG+PTCADPN+L+  IR
Sbjct:   27 FACDISAPATAKYGFCNVSLSYEARAKDLVSRLSLKEKVQQLVNKATGVPRLGVPPYEWWSEALHGVSDVGPGVHFNGTVPGATSFPATILTAASFNTSLWLKMGEVVSTEARAMHNVGLAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVKGLQDVHDAGKSRRLKVSSCCKHYTAYDLDNWKGIDRFHFDAKVTKQDLEDTYQTPFKSCVEEGDVSSVMCSYNRVNGIPTCADPNLLRGVIR 279          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BXL4_ARATH (Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.557e-95
Identity = 167/253 (66.01%), Postives = 198/253 (78.26%), Query Frame = 3
Query:   90 FACD-PKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQ---GSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIR 836
            FACD   + +     FC   L I  RV DL+ RL+LQEK+  L+S A  V RLGI  YEWWSEALHGVS +GPGT F    PGATSFPQVI TA+SFN +L++AIG+VVS EARAMYN G AGLTYWSPNVNIFRDPRWGRGQETPGEDP+L+ KYA+ YV+GLQ   G D +RLKVAA CKH+TAYD+DNW GV+R+ FNA V++QD++DT+  PF+ CV++G VASVMCSYNQVNG PTCADP++L   IR
Sbjct:   44 FACDVAANPSLAAYGFCNTVLKIEYRVADLVARLTLQEKIGFLVSKANGVTRLGIPTYEWWSEALHGVSYIGPGTHFSSQVPGATSFPQVILTAASFNVSLFQAIGKVVSTEARAMYNVGLAGLTYWSPNVNIFRDPRWGRGQETPGEDPLLASKYASGYVKGLQETDGGDSNRLKVAACCKHYTAYDVDNWKGVERYSFNAVVTQQDMDDTYQPPFKSCVVDGNVASVMCSYNQVNGKPTCADPDLLSGVIR 296          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BXL3_ARATH (Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.439e-95
Identity = 168/253 (66.40%), Postives = 199/253 (78.66%), Query Frame = 3
Query:   90 FACDPK-DATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDG---DRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIR 836
            FACD   + +   L FC   L I  RV DL+GRL+L+EK+  L S A  V RLGI  Y+WWSEALHGVSNVG G++F G  PGATSFPQVI TA+SFN +L++AIG+VVS EARAMYN G+AGLT+WSPNVNIFRDPRWGRGQETPGEDP LS KYA +YV+GLQ +DG   +RLKVAA CKH+TAYD+DNW  V+R  FNA V++QD+ DTF  PF+ CV++G VASVMCSYNQVNG PTCADP++L   IR
Sbjct:   34 FACDVTGNPSLAGLRFCNAGLSIKARVTDLVGRLTLEEKIGFLTSKAIGVSRLGIPSYKWWSEALHGVSNVGGGSRFTGQVPGATSFPQVILTAASFNVSLFQAIGKVVSTEARAMYNVGSAGLTFWSPNVNIFRDPRWGRGQETPGEDPTLSSKYAVAYVKGLQETDGGDPNRLKVAACCKHYTAYDIDNWRNVNRLTFNAVVNQQDLADTFQPPFKSCVVDGHVASVMCSYNQVNGKPTCADPDLLSGVIR 286          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BXL7_ARATH (Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 1.272e-86
Identity = 141/258 (54.65%), Postives = 188/258 (72.87%), Query Frame = 3
Query:   87 PFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTA-GLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGD-------RLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIR 836
            P +CDP + TT+   FC+  LPI +R  DL+ RL++ EK+  L++ A  +PRLG+  YEWWSEALHGV+  GPG +F G    ATSFPQVI TA+SF++  W  I +V+  EAR +YN G A G+T+W+PN+NIFRDPRWGRGQETPGEDP+++G YA +YVRGLQG   D        L+ +A CKHFTAYDLD W G+ R+ FNA+VS  D+ +T+  PF+ C+ EG+ + +MC+YN+VNG+P+CADPN+L RT R
Sbjct:   23 PHSCDPSNPTTKLYQFCRTDLPIGKRARDLVSRLTIDEKISQLVNTAPGIPRLGVPAYEWWSEALHGVAYAGPGIRFNGTVKAATSFPQVILTAASFDSYEWFRIAQVIGKEARGVYNAGQANGMTFWAPNINIFRDPRWGRGQETPGEDPMMTGTYAVAYVRGLQGDSFDGRKTLSNHLQASACCKHFTAYDLDRWKGITRYVFNAQVSLADLAETYQPPFKKCIEEGRASGIMCAYNRVNGIPSCADPNLLTRTAR 280          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BXL6_ARATH (Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.558e-76
Identity = 139/268 (51.87%), Postives = 175/268 (65.30%), Query Frame = 3
Query:   90 FACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGS--------------DGDR--------LKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKR 827
            F C P   ++   PFC VSL I QR   L+  L L EK+  L + AA+VPRLGI  YEWWSE+LHG+++ GPG  F G    ATSFPQVI +A+SFN TLW  IG  V+ E RAMYNGG AGLT+W+PN+N+FRDPRWGRGQETPGEDP +  +Y   +VRG Q                D DR        L ++A CKHFTAYDL+ W    R+ FNA V++QD+EDT+  PF  C+ +GK + +MCSYN VNGVP CA  ++L++
Sbjct:   30 FPCKPPHFSS--YPFCNVSLSIKQRAISLVSLLMLPEKIGQLSNTAASVPRLGIPPYEWWSESLHGLADNGPGVSFNGSISAATSFPQVIVSAASFNRTLWYEIGSAVAVEGRAMYNGGQAGLTFWAPNINVFRDPRWGRGQETPGEDPKVVSEYGVEFVRGFQEKKKRKVLKRRFSDDVDDDRHDDDADGKLMLSACCKHFTAYDLEKWGNFTRYDFNAVVTEQDMEDTYQPPFETCIRDGKASCLMCSYNAVNGVPACAQGDLLQK 295          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BGLS_KLUMA (Beta-glucosidase OS=Kluyveromyces marxianus PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.255e-17
Identity = 69/213 (32.39%), Postives = 104/213 (48.83%), Query Frame = 3
Query:  165 VNDLIGRLSLQEKVKLLIS----GAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNG 791
            V  L+  L+  EK+ LL +        + RLGI      S+  +G+     GTKF    P    FP     AS+F+  L E  G++++ E+ A       G     P  N+ R P  GRG E+  EDP L+G   +S V+G+QG       +AA+ KHF   DL++     RF  N+ VS++ + + +  PFR+ V       +M +YN+VNG
Sbjct:    6 VEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----GTKFFDGVPSGC-FPNGTGLASTFDRDLLETAGKLMAKESIAKNAAVILG-----PTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEG-----IAATVKHFVCNDLED----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNG 198          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BGLS_RHIRD (Beta-glucosidase OS=Rhizobium radiobacter GN=cbg-1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.367e-16
Identity = 68/232 (29.31%), Postives = 116/232 (50.00%), Query Frame = 3
Query:  165 VNDLIGRLSLQEKVKLLISGA-----AAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATS---FPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIR 836
            ++D++ +++L+E+V LL SGA      A+ RLG+   +        V++   G + GG   G      FP  I   ++++  L E  G  +  +A++   G +  L   +P VNI R    GR  E   EDP L+   A +Y+ G+Q        VAA+ KHF A    N + ++R   ++ V ++ + + +  PF   V +  V +VM SYN++NG  T  +P +L + +R
Sbjct:    2 IDDILDKMTLEEQVSLL-SGADFWTTVAIERLGVPKIK--------VTDGPNGARGGGSLVGGVKSACFPVAIALGATWDPELIERAGVALGGQAKS--KGASVLL---APTVNIHRSGLNGRNFECYSEDPALTAACAVAYINGVQSQG-----VAATIKHFVA----NESEIERQTMSSDVDERTLREIYLPPFEEAVKKAGVKAVMSSYNKLNGTYTSENPWLLTKVLR 210          
BLAST of FC878722 vs. ExPASy Swiss-Prot
Match: BGLS_SCHPO (Putative beta-glucosidase OS=Schizosaccharomyces pombe GN=SPBC1683.04 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.091e-16
Identity = 70/214 (32.71%), Postives = 105/214 (49.07%), Query Frame = 3
Query:  165 VNDLIGRLSLQEKVKLLISGA-----AAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNG 791
            V DLI +L + EK  +L+SG      AA+PRL I      S+  +G+     GT F    P A  FP      ++F+  L   +G  +++EA+A       G     P VNI R P  GRG E+  ED  LSG  A+  + GLQ  +     V A  KHF   D+++    +R   +  VS++ + + + +PF++        S+M SYN+VNG
Sbjct:    6 VEDLINQLDISEKA-MLLSGTDLWHTAAIPRLNIPSIRL-SDGPNGIR----GTSFFNSSPSAC-FPCGTALGATFDKKLLFEVGEYLAEEAKAKGVSVVLG-----PTVNIHRGPLNGRGFESFSEDSTLSGLAASYVILGLQSKN-----VQACIKHFVCNDMED----ERNSVSIDVSQRALREVYLMPFQLACKYSNFKSLMTSYNKVNG 198          
The following BLAST results are available for this feature:
BLAST of FC878722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
BXL2_ARATH1.137e-12784.92Probable beta-D-xylosidase 2 OS=Arabidopsis thalia... [more]
BXL1_ARATH3.666e-11878.26Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL... [more]
BXL5_ARATH1.771e-9664.82Probable beta-D-xylosidase 5 OS=Arabidopsis thalia... [more]
BXL4_ARATH2.557e-9566.01Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL... [more]
BXL3_ARATH7.439e-9566.40Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL... [more]
BXL7_ARATH1.272e-8654.65Probable beta-D-xylosidase 7 OS=Arabidopsis thalia... [more]
BXL6_ARATH1.558e-7651.87Probable beta-D-xylosidase 6 OS=Arabidopsis thalia... [more]
BGLS_KLUMA1.255e-1732.39Beta-glucosidase OS=Kluyveromyces marxianus PE=3 S... [more]
BGLS_RHIRD2.367e-1629.31Beta-glucosidase OS=Rhizobium radiobacter GN=cbg-1... [more]
BGLS_SCHPO3.091e-1632.71Putative beta-glucosidase OS=Schizosaccharomyces p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA26BA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA26BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878722 ID=FC878722; Name=FC878722; organism=Citrus clementina; type=EST; length=838bp
CCGCAAAAATGGCTTCCACCATTGCTTTCTTTTTTCTTGGGCTCATTCTC
TTGAGTGCTTCTAGTTCTGGCTTAGCAGCCCGGGAGCCATTTGCATGCGA
CCCAAAAGATGCAACGACAAGAACGTTGCCGTTCTGTCAAGTTTCTTTGC
CGATCCCGCAGAGAGTGAATGACCTCATTGGGAGGCTGAGTTTGCAAGAG
AAGGTTAAGCTGCTGATAAGCGGTGCAGCAGCGGTTCCGCGGCTTGGAAT
CAAAGGATATGAATGGTGGTCTGAGGCTCTTCATGGAGTTTCAAATGTGG
GCCCTGGAACTAAGTTTGGTGGGGACTTCCCCGGGGCCACCAGCTTCCCT
CAAGTCATCACAACCGCTTCTTCTTTCAATGCAACCTTGTGGGAAGCCAT
CGGACGGGTCGTGTCGGATGAAGCAAGAGCAATGTACAACGGAGGCACGG
CCGGACTTACGTATTGGAGCCCAAATGTCAACATATTTAGGGACCCAAGA
TGGGGCCGTGGACAGGAGACGCCCGGTGAGGACCCTGTGTTATCCGGTAA
ATATGCTGCTAGCTACGTCAGGGGGCTACAGGGCAGTGACGGTGACCGGT
TGAAGGTAGCTGCTTCTTGCAAGCACTTCACGGCTTATGACCTCGATAAC
TGGAACGGTGTTGATCGCTTCCATTTTAACGCCAAGGTAAGCAAGCAGGA
CATTGAGGACACATTTGATGTGCCCTTTAGAATGTGTGTGATGGAAGGGA
AAGTGGCCAGTGTCATGTGCTCATACAATCAAGTCAACGGCGTCCCCACC
TGCGCCGATCCAAATATTCTAAAGAGGACTATACGTGG
back to top