FC878724
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_PELPD (30S ribosomal protein S17 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13 Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2 Query: 137 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVSTV 295 G+VVS+KM K+VVV VDRL H VYN+Y+KR++K+ HDENN C IGDRV + Sbjct: 12 GVVVSDKMDKTVVVKVDRLIKHPVYNKYIKRSAKYKVHDENNVCKIGDRVQII 64
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_METCA (30S ribosomal protein S17 OS=Methylococcus capsulatus GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13 Identity = 31/57 (54.39%), Postives = 47/57 (82.46%), Query Frame = 2 Query: 119 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVS 289 +++SV G VVSNKM +++VVA++R H +Y +Y++RT+K +AHDENNEC+IGD V+ Sbjct: 7 RVRSVTGRVVSNKMDRTIVVAIERQVSHPLYGKYIRRTTKVLAHDENNECSIGDLVT 63
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum GN=rpsQ PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12 Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 2 Query: 119 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286 Q + +G V+S+KM KS+VVA++R+ H +Y +Y+KRT+K AHDENNECN+GD V Sbjct: 4 QTRIQLGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTV 59
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_GEOSF (30S ribosomal protein S17 OS=Geobacter sp. (strain FRC-32) GN=rpsQ PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12 Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 2 Query: 125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVSTV 295 K+ +G+VVS+KM K+VVV VDRL H VYN+Y+KR++K+ AHD +N C GDRV V Sbjct: 8 KTQIGVVVSDKMDKTVVVKVDRLIKHSVYNKYIKRSAKYKAHDVDNSCKTGDRVLIV 64
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_BAUCH (30S ribosomal protein S17 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpsQ PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12 Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 2 Query: 137 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286 G VVSNKM KS+VVA++R+ H +Y +Y+KRT+K AHDENN CNIGD + Sbjct: 15 GRVVSNKMDKSIVVAIERIIKHPIYGKYIKRTTKIHAHDENNACNIGDLI 64
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_THESQ (30S ribosomal protein S17 OS=Thermotoga sp. (strain RQ2) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2 Query: 125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286 K + G+VVS+KM K+VVVAV++L H +Y +YVKRT K+ AHDE NEC IGD V Sbjct: 4 KRLTGIVVSDKMDKTVVVAVEKLVQHTIYKKYVKRTKKYHAHDERNECKIGDVV 57
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_THEP1 (30S ribosomal protein S17 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2 Query: 125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286 K + G+VVS+KM K+VVVAV++L H +Y +YVKRT K+ AHDE NEC IGD V Sbjct: 4 KRLTGIVVSDKMDKTVVVAVEKLVQHPIYKKYVKRTKKYHAHDERNECKIGDVV 57
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_CALS8 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12 Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 2 Query: 125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286 K+ +G+VVS+KM K+VVVAV+ L H +Y + +KRT+KF AHDENNEC +GD+V Sbjct: 9 KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKV 62
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_ANATD (30S ribosomal protein S17 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12 Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2 Query: 125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286 K+ VG+VVS+KM K+VVVAV+R H +Y + +KRT+KF AHDENNEC +GD+V Sbjct: 9 KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKV 62
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_KLEP7 (30S ribosomal protein S17 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12 Identity = 30/56 (53.57%), Postives = 46/56 (82.14%), Query Frame = 2 Query: 119 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286 +++++ G VVS+KM+KS+VVA++R+ H VY +++KRT+K HDENNEC IGD+V Sbjct: 4 KIRTLQGRVVSDKMEKSIVVAIERMVKHPVYGKFIKRTTKLHVHDENNECGIGDKV 59 The following BLAST results are available for this feature:
BLAST of FC878724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878724 ID=FC878724; Name=FC878724; organism=Citrus clementina; type=EST; length=890bpback to top |