FC878724

Overview
NameFC878724
Unique NameFC878724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length890
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_PELPD (30S ribosomal protein S17 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  137 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVSTV 295
            G+VVS+KM K+VVV VDRL  H VYN+Y+KR++K+  HDENN C IGDRV  +
Sbjct:   12 GVVVSDKMDKTVVVKVDRLIKHPVYNKYIKRSAKYKVHDENNVCKIGDRVQII 64          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_METCA (30S ribosomal protein S17 OS=Methylococcus capsulatus GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 31/57 (54.39%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  119 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVS 289
            +++SV G VVSNKM +++VVA++R   H +Y +Y++RT+K +AHDENNEC+IGD V+
Sbjct:    7 RVRSVTGRVVSNKMDRTIVVAIERQVSHPLYGKYIRRTTKVLAHDENNECSIGDLVT 63          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum GN=rpsQ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  119 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286
            Q +  +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENNECN+GD V
Sbjct:    4 QTRIQLGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTV 59          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_GEOSF (30S ribosomal protein S17 OS=Geobacter sp. (strain FRC-32) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVSTV 295
            K+ +G+VVS+KM K+VVV VDRL  H VYN+Y+KR++K+ AHD +N C  GDRV  V
Sbjct:    8 KTQIGVVVSDKMDKTVVVKVDRLIKHSVYNKYIKRSAKYKAHDVDNSCKTGDRVLIV 64          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_BAUCH (30S ribosomal protein S17 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpsQ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:  137 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286
            G VVSNKM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN CNIGD +
Sbjct:   15 GRVVSNKMDKSIVVAIERIIKHPIYGKYIKRTTKIHAHDENNACNIGDLI 64          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_THESQ (30S ribosomal protein S17 OS=Thermotoga sp. (strain RQ2) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286
            K + G+VVS+KM K+VVVAV++L  H +Y +YVKRT K+ AHDE NEC IGD V
Sbjct:    4 KRLTGIVVSDKMDKTVVVAVEKLVQHTIYKKYVKRTKKYHAHDERNECKIGDVV 57          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_THEP1 (30S ribosomal protein S17 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286
            K + G+VVS+KM K+VVVAV++L  H +Y +YVKRT K+ AHDE NEC IGD V
Sbjct:    4 KRLTGIVVSDKMDKTVVVAVEKLVQHPIYKKYVKRTKKYHAHDERNECKIGDVV 57          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_CALS8 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286
            K+ +G+VVS+KM K+VVVAV+ L  H +Y + +KRT+KF AHDENNEC +GD+V
Sbjct:    9 KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKV 62          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_ANATD (30S ribosomal protein S17 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  125 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286
            K+ VG+VVS+KM K+VVVAV+R   H +Y + +KRT+KF AHDENNEC +GD+V
Sbjct:    9 KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKV 62          
BLAST of FC878724 vs. ExPASy Swiss-Prot
Match: RS17_KLEP7 (30S ribosomal protein S17 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 30/56 (53.57%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  119 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRV 286
            +++++ G VVS+KM+KS+VVA++R+  H VY +++KRT+K   HDENNEC IGD+V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERMVKHPVYGKFIKRTTKLHVHDENNECGIGDKV 59          
The following BLAST results are available for this feature:
BLAST of FC878724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RS17_PELPD3.517e-1362.2630S ribosomal protein S17 OS=Pelobacter propionicu... [more]
RS17_METCA6.000e-1354.3930S ribosomal protein S17 OS=Methylococcus capsula... [more]
RS17_PHOPR1.023e-1255.3630S ribosomal protein S17 OS=Photobacterium profun... [more]
RS17_GEOSF1.023e-1257.8930S ribosomal protein S17 OS=Geobacter sp. (strain... [more]
RS17_BAUCH1.023e-1262.0030S ribosomal protein S17 OS=Baumannia cicadellini... [more]
RS17_THESQ1.337e-1261.1130S ribosomal protein S17 OS=Thermotoga sp. (strai... [more]
RS17_THEP11.337e-1261.1130S ribosomal protein S17 OS=Thermotoga petrophila... [more]
RS17_CALS81.337e-1259.2630S ribosomal protein S17 OS=Caldicellulosiruptor ... [more]
RS17_ANATD1.337e-1261.1130S ribosomal protein S17 OS=Anaerocellum thermoph... [more]
RS17_KLEP71.746e-1253.5730S ribosomal protein S17 OS=Klebsiella pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878724 ID=FC878724; Name=FC878724; organism=Citrus clementina; type=EST; length=890bp
TAACGGCCCCCGAACCCTGCCGCCGCCTCACCACGGGTTATTGTCGTGCG
CCGTCGACCTCCGTCAGCTTCTGTGGCCACCGTCAGTGTCGTCGTTAAGC
ATACAAATCGGGCCGTCGCAAATGAAGTCGGTGGTTGGATTGGTAGTGTC
AAACAAGATGCAAAAATCAGTAGTAGTGGCCGTCGACAGACTCTTCCACC
ACAAGGTTTACAATCGCTACGTCAAACGAACCTCCAAATTCATGGCCCAC
GACGAGAACAACGAATGCAACATCGGTGACCGAGTCAGTACTGTTATGCC
TCTTAAGTAATGATGGGTGTTTTCACTTGTATCAGTCATTTTCCGAATCC
CATTTGATATGCAATCGTTTCAACTGCTTCATTGATGGTTACCATTGTTA
TGGGGTTTATGTTTCGAGCCTGTGGCTTCAGGTTAGGTTGGATCCTTCTA
GACCGTTAAGCAAGCATAAGCATTGGCTTGTTGCCGAAATTCTAAAGAAA
GCACGTATCTATGTACCACCCTCGGCAGATAATGCTGCTGCTGCTGCTGT
TTCAAATCCTGAGACTGAAGCACCTGTTTCATCATCTTAAGGTTTGACTA
GAGTATGATGTGAATTTTTTTTTTAAAGTAAATTTGCTGATTCATGATCA
AGAATTATATTTTGTTTAAGGCCTTGATAGATATTAATCTCCAGATACTT
TAATTGAGTGAAAATTGATTTCAATAACTATTTGAATAAGATTTGCATTT
TCTATTGGGTTTATCTATTTTGGTCTATAAATGAGCCTTGAAATTGAATG
TATAAATTAATGTTAAAAATTGAAACATGTTTTGAAGTGATCTAAGAAAT
TTTGTGTTTCATGTTTGGTGAAATTATTTTCTTTTTGGGT
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