FC878725

Overview
NameFC878725
Unique NameFC878725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4307 contig Ccv1_Contig4307:1..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878725 vs. ExPASy Swiss-Prot
Match: GPT_DICDI (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Dictyostelium discoideum GN=alg7 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.000e-43
Identity = 101/222 (45.50%), Postives = 141/222 (63.51%), Query Frame = 3
Query:  216 IPYFYLLFYHYKIESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGT-IKVPESLGIVVGAVFLVLAILFQYFNFTA--DSNWLVEYNAALASICFMXXXXXXXXXXXXPWRVKLILPSFAALPLLMAYAGHTSIIIPK-----PLVPYVGLEILDLGWIYKLYMFLLAVFCTNSHNIHAGLNGLEVGQTVVIASAIFVHNIMQ 857
            +P   LL Y   +   LQ  I+ +   S     +T K+IP  +    + NL G D+NKKG P+ +  K+PESLGI V  V+LV  ILFQ F + +  ++  L EYNAAL SICFM             WR KLILP FA+LPLL+AYAG T++++P      PL  ++G+ + DLG  Y++Y+ +LA+FCTNS NI AG+NGLEVGQ+VVIA++I +HN+++
Sbjct:   16 LPPILLLIYLPNVS--LQWIIVQSGFFSFGAGLLTYKLIPSVADLTSQANLTGMDLNKKGDPKFSGKKIPESLGICVAVVYLVCVILFQTFQWFSFPETIQLSEYNAALTSICFMILLGFGDDVLNLRWRYKLILPMFASLPLLVAYAGGTTVVVPDINFPVPLREWLGV-VFDLGIFYRIYLLMLAIFCTNSINILAGINGLEVGQSVVIATSIIIHNLIE 234          
BLAST of FC878725 vs. ExPASy Swiss-Prot
Match: GPT_HUMAN (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Homo sapiens GN=DPAGT1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 7.561e-34
Identity = 89/213 (41.78%), Postives = 122/213 (57.28%), Query Frame = 3
Query:  258 SELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNF----------TADSNWLVEYNAALASICFMXXXXXXXXXXXXPWRVKLILPSFAALPLLMAYA---GHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSHNIHAGLNGLEVGQTVVIASAIFVHNIMQ 857
            SEL   +LIN  +SL GF  T  +IP    + +   L G D+NK    Q    +PES G++ GAVFL++   F  F F              +  V    AL +IC M             WR KL+LP+ A+LPLLM Y    G+T+I++PKP  P +GL  LDLG +Y +YM LLAVFCTN+ NI AG+NGLE GQ++VI+++I V N+++
Sbjct:    5 SELPMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQ----IPESQGVISGAVFLIILFCFIPFPFLNCFVKEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILGLH-LDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVFNLVE 212          
BLAST of FC878725 vs. ExPASy Swiss-Prot
Match: GPT_BOVIN (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Bos taurus GN=DPAGT1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.200e-33
Identity = 90/215 (41.86%), Postives = 122/215 (56.74%), Query Frame = 3
Query:  261 ELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNA-------------ALASICFMXXXXXXXXXXXXPWRVKLILPSFAALPLLMAYA---GHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSHNIHAGLNGLEVGQTVVIASAIFVHNIMQ 857
            EL   +L+N   SL GF  T  +IP    + +   L G D+NK    Q    +PES G++ GAVFL++   F  F F    N  VE                AL +IC M             WR KL+LP+ A+LPLLM Y    G+T+I++PKPL P +GL  LDLG +Y +YM LLAVFCTN+ NI AG+NGLE GQ++VI+++I V N+++
Sbjct:    6 ELPMPLLVNLIGSLMGFVATVTLIPAFRGHFIAARLCGQDLNKSSREQ----IPESQGVISGAVFLIILFCFIPFPFL---NCFVEQQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPLRPILGLH-LDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVFNLVE 212          
BLAST of FC878725 vs. ExPASy Swiss-Prot
Match: GPT_CRILO (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Cricetulus longicaudatus GN=DPAGT1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.426e-32
Identity = 89/215 (41.40%), Postives = 121/215 (56.28%), Query Frame = 3
Query:  261 ELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNA-------------ALASICFMXXXXXXXXXXXXPWRVKLILPSFAALPLLMAYA---GHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSHNIHAGLNGLEVGQTVVIASAIFVHNIMQ 857
            EL   +L+N   SL GF  T  +IP    + +   L G D+NK    Q    +PES G++ GAVFL++   F  F F    N  VE                AL +IC M            PWR KL+LP+ A+LPLLM Y    G+T+I++PKP    +GL  LDLG +Y +YM LLAVFCTN+ NI AG+NGLE GQ++VI+++I V N+++
Sbjct:    6 ELPLPLLVNLFGSLLGFVATVTLIPAFRSHFIAARLCGQDLNKLSRQQ----IPESQGVICGAVFLIILFCFIPFPFL---NCFVEEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNLPWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRWILGLH-LDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVFNLVE 212          
BLAST of FC878725 vs. ExPASy Swiss-Prot
Match: GPT_CRIGR (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Cricetulus griseus GN=DPAGT1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.577e-31
Identity = 88/215 (40.93%), Postives = 120/215 (55.81%), Query Frame = 3
Query:  261 ELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNA-------------ALASICFMXXXXXXXXXXXXPWRVKLILPSFAALPLLMAYA---GHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSHNIHAGLNGLEVGQTVVIASAIFVHNIMQ 857
            EL   +L+N   SL GF  T  +IP    + +   L G D+NK    Q    +PES G++ GAVFL++   F  F F    N  VE                AL +IC M             WR KL+LP+ A+LPLLM Y    G+T+I++PKP    +GL  LDLG +Y +YM LLAVFCTN+ NI AG+NGLE GQ++VI+++I V N+++
Sbjct:    6 ELPLPLLVNLFGSLLGFVATVTLIPAFRSHFIAARLCGQDLNKLSRQQ----IPESQGVICGAVFLIILFCFIPFPFL---NCFVEEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRWILGLH-LDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVFNLVE 212          
BLAST of FC878725 vs. ExPASy Swiss-Prot
Match: GPT_MOUSE (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Mus musculus GN=Dpagt1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.991e-31
Identity = 88/217 (40.55%), Postives = 120/217 (55.30%), Query Frame = 3
Query:  255 ESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNA-------------ALASICFMXXXXXXXXXXXXPWRVKLILPSFAALPLLMAYA---GHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSHNIHAGLNGLEVGQTVVIASAIFVHNIMQ 857
            E  L   +L+N   SL GF  T  +IP    + +   L G D+NK    Q    +PES G++ GAVFL++   F  F F    N  VE                AL +IC M             WR KL+LP+ A+LPLLM Y    G+T+I++PKP    +GL  LDLG +Y +YM LLAVFCTN+ NI AG+NGLE GQ++VI+++I V N+++
Sbjct:    6 ELPLPLPLLVNLIGSLLGFVATVTLIPAFRSHFIAARLCGQDLNKLSQQQ----IPESQGVISGAVFLIILFCFIPFPFL---NCFVEEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRWILGLH-LDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVFNLVE 214          
BLAST of FC878725 vs. ExPASy Swiss-Prot
Match: GPT_YEAST (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Saccharomyces cerevisiae GN=ALG7 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.136e-20
Identity = 70/245 (28.57%), Postives = 115/245 (46.94%), Query Frame = 3
Query:  210 FAIPYFYLLFYHYKIESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLA------ILFQYFNFTADSNW---------------------LVEYNAALASICFMXXXXXXXXXXXXPWRVKLILPSFAALPLLMAYA---GHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSHNIHAGLNGLEVGQTVVIASAIFVHNIM 854
            F++     L Y+ K +     +++   G  +AG+  T  +IP   +  ++  LFG D++K G P     +PE++G +  AV+L +       I ++Y   T                          L EY +A+  +                WR K  LP+ AA+PLLM Y    G T ++IP  +  ++    +DLG  Y +YM  +A+FC NS NI AG+NGLEVGQ +V+A    +++++
Sbjct:    5 FSLALITCLIYYSKNQGP--SALVAAVGFGIAGYLATDMLIPRVGKSFIKIGLFGKDLSKPGRPV----LPETIGAIPAAVYLFVMFIYIPFIFYKYMVITTSGGGHRDVSVVEDNGMNSNIFPHDKLSEYLSAILCLESTVLLGIADDLFDLRWRHKFFLPAIAAIPLLMVYYVDFGVTHVLIPGFMERWLKKTSVDLGLWYYVYMASMAIFCPNSINILAGVNGLEVGQCIVLAILALLNDLL 243          
BLAST of FC878725 vs. ExPASy Swiss-Prot
Match: GPT_SCHPO (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Schizosaccharomyces pombe GN=gpt2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.260e-19
Identity = 67/222 (30.18%), Postives = 107/222 (48.20%), Query Frame = 3
Query:  267 QRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILF------QYF------NFTADSN------------WLVEYNAALASICFMXXXXXXXXXXXXPWRVKLILPSFAALPLLMAYA---GHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSHNIHAGLNGLEVGQTVVIASAIFVHNI 851
            Q  +L N GLS+  +  T   IP      ++R   G D+NK         +PE++G V   V+ +  I+F      +Y       N  +D +             L  Y +AL SI  +             WR K  LP+ AA+PLL+ Y    G T + +P  + P++   +++LG++Y  YM  +A+FC NS NI AG+NG+E GQ++V+A  I  +++
Sbjct:   23 QSPLLSNVGLSVLAYKATAMFIPRVGPSFIKRGFSGKDMNKVEK----YVIPETMGAVSALVYFMCMIIFIPVLFYKYLVPNHNPNLPSDGSVAEVAKSQFPHDLLGAYLSALLSILSVSLLGILDDLFDIRWRHKFFLPAIAAIPLLVVYYVDYGVTYVSVPSIVRPFLKRSLINLGFLYYFYMAAVAIFCPNSINIIAGVNGVEAGQSLVLALVIACNDL 240          
The following BLAST results are available for this feature:
BLAST of FC878725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GPT_DICDI4.000e-4345.50UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
GPT_HUMAN7.561e-3441.78UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
GPT_BOVIN2.200e-3341.86UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
GPT_CRILO1.426e-3241.40UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
GPT_CRIGR1.577e-3140.93UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
GPT_MOUSE5.991e-3140.55UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
GPT_YEAST2.136e-2028.57UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
GPT_SCHPO5.260e-1930.18UDP-N-acetylglucosamine--dolichyl-phosphate N-acet... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA33CG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878725 ID=FC878725; Name=FC878725; organism=Citrus clementina; type=EST; length=858bp
CAAGGCAAAGTCGAGAAATTGAGAATAAAATTTGCGCGAAGTAGAGTTTG
AGCATGGCAGCTCGCAGGAGAGCTTCCTCAAGAGCAACAGCAACAGTAAC
AGCAACTGATACTGATAAATCAAAATCCGAAACCCCGACAAAGCAAGAAC
ATGCTGACCCGCCAATCGCTCCACCAAAATCGGGTCTAATATTCAAGCTC
TGTCTTTTCTTTGCAATCCCGTACTTTTACTTGTTATTTTACCACTACAA
GATTGAATCTGAGCTCCAGAGATCCATTCTCATCAATGCCGGCCTCAGCC
TCGCTGGATTCTTTATCACCCAGAAGATGATACCCGTTGCTTCCAGATAC
GTCTTGAGAAGAAACTTGTTTGGTTATGATATCAATAAGAAGGGCACGCC
TCAAGGCACCATTAAAGTGCCAGAGTCGTTGGGTATTGTTGTTGGGGCTG
TCTTTTTGGTCTTGGCAATCTTATTTCAGTATTTTAACTTCACAGCAGAT
TCAAATTGGCTTGTCGAGTACAATGCAGCATTGGCATCCATCTGCTTCAT
GCTTTTGCTTGGATTTGTAGATGATGTCCTTGATGTGCCTTGGAGAGTGA
AATTAATACTGCCATCATTTGCTGCTCTTCCCTTGTTGATGGCATATGCT
GGACATACTTCTATTATTATACCAAAGCCTCTTGTTCCTTATGTTGGGCT
TGAGATTTTGGATTTAGGTTGGATATATAAACTTTATATGTTTCTTTTGG
CTGTGTTTTGCACAAACTCCCATAATATCCATGCTGGTCTGAATGGCCTT
GAAGTTGGTCAAACTGTCGTTATTGCATCTGCTATATTTGTACATAACAT
CATGCAAA
back to top