FC878726

Overview
NameFC878726
Unique NameFC878726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9094 contig Ccv1_Contig9094:46..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: PPF1_PEA (Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 3.856e-95
Identity = 184/276 (66.67%), Postives = 199/276 (72.10%), Query Frame = 3
Query:   90 MTKTLISSPPFVGTXXXXXXXXXXXXXXXXXXNRRLASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLTFVDGHPPLGWHDTAAYLVLP 917
            M KTLISSP F+GT                  NR    T+V+ SF +             + +F+R E LLY                         QKNGGWFGFIS+ MEFVLK+LKDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL GPT+IAARQSGSGISWL  FVDGHP LGW+DTAAYLVLP
Sbjct:    1 MAKTLISSPSFLGTPLPSLHRTFSP-------NRTRLFTKVQFSFHQLPPIQSVSHSVDLSGIFARAEGLLYTLADATVAADAAASTDVAA------QKNGGWFGFISDGMEFVLKVLKDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLP 263          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: ALB3_ARATH (Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 2.116e-93
Identity = 174/239 (72.80%), Postives = 187/239 (78.24%), Query Frame = 3
Query:  201 STRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLTFVDGHPPLGWHDTAAYLVLP 917
            ST VR S  E              ++F+R ESLLY                         QK+GGWFGFIS+AME VLKILKDG+ AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IAARQSGSGISWL  FVDGHPPLGW+DT AYLVLP
Sbjct:   51 STTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDSSAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLP 285          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: ALB31_ARATH (ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3)

HSP 1 Score: 293.893 bits (751), Expect = 8.629e-79
Identity = 137/178 (76.97%), Postives = 161/178 (90.45%), Query Frame = 3
Query:  384 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLTFVDGHPPLGWHDTAAYLVLP 917
            ++  WF  I+  ME +LK+LKDG+  VHVPYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+RLY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+GSGISWL  F++GHPPLGW DT AYLVLP
Sbjct:   92 QSNDWFSGIANYMETILKVLKDGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLP 269          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: ALB32_CHLRE (Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 7.339e-62
Identity = 113/176 (64.20%), Postives = 142/176 (80.68%), Query Frame = 3
Query:  390 GGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLTFVDGHPPLGWHDTAAYLVLP 917
            GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVATFPLT+KQVESTL++Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY ALSN A EGLLTEGFFWIPSL GPTTI     G G+ WL+ F +G PP+GW + AAYLV+P
Sbjct:   71 GGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVESTLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNALSNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMP 241          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: ALB31_CHLRE (Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.999e-59
Identity = 110/181 (60.77%), Postives = 148/181 (81.77%), Query Frame = 3
Query:  381 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLL-TEGFFWIPSLSGPTTIAARQSGSGISWLLTF-VDGHPPLGWHDTAAYLVLP 917
            Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T+PLTK+QVES +A+Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATIP++IGL+ +L+NVAN+GLL T+GF+++PSL+GPTT+A RQSG G SWL     DG PP+GW D AAYL LP
Sbjct:  108 QRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTYPLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATIPIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIGWEDAAAYLTLP 288          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_PELPD (Inner membrane protein oxaA OS=Pelobacter propionicus (strain DSM 2379) GN=oxaA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.400e-20
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  393 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLTFVDGHPPL 881
            GWF  I++ + + LK     +       +YG AII++T+I+K   FPLT K  +S   MQ +QP + A++++Y  ++E +      LYR   VNPL GCLP L  IPV+  LY+AL   + E      +FWI  LSGP  +  +  G      L FV G  PL
Sbjct:  326 GWFTVIAKPLLYTLKYFYRYVG------NYGVAIIIITIILKALFFPLTHKSYKSMKDMQKIQPMMAALKEKYKDDREGMNKAVMELYRDHKVNPLGGCLPMLVQIPVFFALYKALM-FSIELRHAPFYFWITDLSGPDNLFGQMLG------LPFVIGPLPL 475          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_ANADF (Inner membrane protein oxaA OS=Anaeromyxobacter sp. (strain Fw109-5) GN=oxaA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.829e-20
Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  399 FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGIS 845
            F F +  + FV++ L+       +  ++G AIILLTV+VKV  +PLT K ++S   M+ LQP+I+ ++ ++  ++E++ L T +LY+Q  VNPL GCLP L  +P+W  LY  L       L  E F WI  L+    +       G+S
Sbjct:  337 FAFFARLLLFVMRWLE------RLVANWGLAIILLTVLVKVLLYPLTAKSMQSMNEMRKLQPEIEKLKAKHGNDREKLNLATMQLYQQHKVNPLGGCLPMLIQLPIWFALYATLQTSVE--LYREPFLWIHDLTVKDPLYVLPIAMGVS 477          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_SYNFM (Inner membrane protein oxaA OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=oxaA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.074e-20
Identity = 53/139 (38.13%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  393 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF-FWIPSLSGP 806
            GWF FI++ + +VL             +++G AIILLT+++K+  +PLT+K  +S   M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+ L+      L  E F  WI  L+ P
Sbjct:  338 GWFTFIAKPLVYVLDWF------YRYTHNWGVAIILLTIVIKILFWPLTQKSYQSMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYRMLNGAVE--LRHEPFMLWIDDLTAP 468          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_CHLT3 (Inner membrane protein oxaA OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=oxaA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.321e-20
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  477 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTI 815
            SYG  IIL  + +K+ T+PLT    +S   M  LQP++KAIQ++Y  N E++Q E S +YR+AGVNPL GCLPT+  +P+   ++    +     L  EGF W   LS P +I
Sbjct:  369 SYGVIIILFALFIKLVTYPLTMASTKSMKKMAALQPQLKAIQEQYKDNPEKLQAEISGIYREAGVNPLGGCLPTVIQMPLLFAMFYVFRSSIQ--LRQEGFLWSNDLSVPDSI 479          
BLAST of FC878726 vs. ExPASy Swiss-Prot
Match: OXAA_CLOTE (Membrane protein oxaA OS=Clostridium tetani GN=oxaA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.548e-19
Identity = 44/121 (36.36%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  474 YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 836
            YSYG AII +T+I+K+   PL  K + ST+ +  +QP+I+ IQ++Y  + +R+Q E  +LY++  +NP   CLP L   P+ I LY   +N+  +G+    F W+  L+ P  + A  +G+
Sbjct:   28 YSYGVAIIFVTLIIKLILLPLNIKSMRSTIRINEIQPEIQKIQKKYKNDPQRLQQEQMKLYKEYNINPFGSCLPLLLQWPILIALYYVFNNI--QGISGVSFLWVKDLASPDIVLAVLAGA 146          
The following BLAST results are available for this feature:
BLAST of FC878726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
PPF1_PEA3.856e-9566.67Inner membrane protein PPF-1, chloroplastic OS=Pis... [more]
ALB3_ARATH2.116e-9372.80Inner membrane protein ALBINO3, chloroplastic OS=A... [more]
ALB31_ARATH8.629e-7976.97ALBINO3-like protein 1, chloroplastic OS=Arabidops... [more]
ALB32_CHLRE7.339e-6264.20Inner membrane ALBINO3-like protein 2, chloroplast... [more]
ALB31_CHLRE1.999e-5960.77Inner membrane ALBINO3-like protein 1, chloroplast... [more]
OXAA_PELPD1.400e-2037.42Inner membrane protein oxaA OS=Pelobacter propioni... [more]
OXAA_ANADF1.829e-2036.24Inner membrane protein oxaA OS=Anaeromyxobacter sp... [more]
OXAA_SYNFM4.074e-2038.13Inner membrane protein oxaA OS=Syntrophobacter fum... [more]
OXAA_CHLT35.321e-2043.36Inner membrane protein oxaA OS=Chloroherpeton thal... [more]
OXAA_CLOTE1.548e-1936.36Membrane protein oxaA OS=Clostridium tetani GN=oxa... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA71CA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA71CA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878726 ID=FC878726; Name=FC878726; organism=Citrus clementina; type=EST; length=918bp
CCCGTGCTTCCTCATCTCCACCATTCATGAGAAGCTGAGCTCAATTCTCA
TAAAAAAAAAAAAAAAAAGAAAAGAAAAATTCACCCTCCATGACGAAAAC
TCTGATTTCATCTCCACCGTTCGTCGGCACACCACTCCCTTCACCATTAT
CGTCACTCTCTCGCCACGGGCTCCACCCGCTTCCTAACCGTAGACTCGCC
TCCACCAGAGTTAGACTCAGCTTCCAAGAAATTCCTCCAATTCTCTCCCT
CGACTCTTCTATCGATCTCAACTCAGTTTTTAGTCGAACTGAGAGCTTGC
TTTACACGCTGGCAGACGCTGCCGTTTCACTTGATTCTGCTTCTGGCGGA
GCTGCCTCCACGTCAGCTGATGGGGCTACGCAGAAAAACGGCGGCTGGTT
CGGTTTTATCTCTGAAGCTATGGAATTCGTTCTCAAGATATTGAAGGATG
GGATTGATGCTGTTCATGTGCCGTATTCATATGGCTTTGCAATAATTTTG
TTGACAGTTATTGTTAAAGTTGCCACATTTCCTTTAACAAAGAAACAGGT
GGAATCAACATTAGCAATGCAAAACCTTCAACCTAAGATCAAAGCTATTC
AACAAAGATATGCTGGCAATCAGGAAAGAATTCAGCTTGAGACATCACGT
TTATACCGGCAGGCTGGGGTTAATCCATTAGCAGGTTGTTTGCCAACATT
GGCTACTATACCAGTCTGGATAGGTCTCTATCAAGCTCTTTCAAATGTGG
CAAATGAGGGTCTGTTAACAGAAGGTTTCTTTTGGATACCCTCATTGTCT
GGGCCAACTACGATTGCTGCTCGACAAAGTGGATCTGGCATTTCCTGGCT
CTTAACGTTTGTGGATGGGCATCCGCCATTGGGCTGGCATGACACTGCTG
CATACCTTGTTTTACCTG
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