FC878727

Overview
NameFC878727
Unique NameFC878727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3330 contig Ccv1_Contig3330:1..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878727 vs. ExPASy Swiss-Prot
Match: SPAP_STRMU (Cell surface antigen I/II OS=Streptococcus mutans GN=spaP PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  519 YAVSTTICPVGEPS----KPAQPEKPEQPTKPVYEQPKPSKPAETQPGYEQ---PKPSKPVYEQPSKPV-----YEQPSQPATPGKPTYPGKPSQPAPHHNGTVPVYPTPPAESSNKPVCPATPVP 860
            Y+++  I  V  P     KP  P KP  PTKP YE  KP KPA   P YE+   P    P   +P+KP       E+P +PA P +P+Y  +P+ P    +   P  PTPP   + KP+ PA   P
Sbjct:  813 YSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRTPDQAEPNKPTPPTYETEKPLEPA-PVEPSYEAEPTPPTRTPDQAEPNKPTPPTYETEKPLEPAPVEP 937          
BLAST of FC878727 vs. ExPASy Swiss-Prot
Match: PAC_STRMU (Major cell-surface adhesin PAc OS=Streptococcus mutans GN=pac PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  519 YAVSTTICPVGEPS----KPAQPEKPEQPTKPVYEQPKPSKPAETQPGYEQ---PKPSKPVYEQPSKPV-----YEQPSQPATPGKPTYPGKPSQPAPHHNGTVPVYPTPPAESSNKPVCPATPVP 860
            Y+++  I  V  P     KP  P KP  PTKP YE  KP KPA   P YE+   P    P   +P+KP       E+P +PA P +P+Y  +P+ P    +   P  PTPP   + KP+ PA   P
Sbjct:  816 YSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRTPDQAEPNKPTPPTYETEKPLEPA-PVEPSYEAEPTPPTRTPDQAEPNKPTPPTYETEKPLEPAPVEP 940          
BLAST of FC878727 vs. ExPASy Swiss-Prot
Match: PLS_STAES (Accumulation-associated protein OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0175 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 45/109 (41.28%), Postives = 54/109 (49.54%), Query Frame = 3
Query:  552 EPSKPAQPEKPEQPTKPVYE--QPKPSKPAETQPGYEQPKPSKPVYE-QPSKPVYEQPSQPATPGKPTYPGKPSQPAPHHNGTVPVYPTPPAE-----SSNKPVCPATP 854
            EP KPA+P KP +P KP       +P KPAE     E  KP++P    +P KP   +P  PA PGKP  PGKP++P        P  P  PAE        KP  P TP
Sbjct: 1304 EPGKPAEPGKPAEPGKPAEPGTPAEPGKPAEPGKPAEPGKPAEPGKPAEPGKPA--EPGTPAEPGKPAEPGKPAEPGKPAEPGTPAEPGKPAEPGTPAEPGKPAEPGTP 1410          

HSP 2 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 43/106 (40.57%), Postives = 51/106 (48.11%), Query Frame = 3
Query:  552 EPSKPAQPEKPEQPTKPVYEQPKPSKPAETQPGYEQPKPSKPVYEQPSKPVYEQPSQPATPGKPTYPGKPSQPAPHHNGTVPVYPTPPAE-----SSNKPVCPATP 854
            EP KPA+P KP +P KP     +P KPAE         P  P   +P KP   +P +PA PGKP  PGKP++P        P  P  PAE        KP  P TP
Sbjct: 1298 EPGKPAEPGKPAEPGKPA----EPGKPAE---------PGTPA--EPGKPA--EPGKPAEPGKPAEPGKPAEPGKPAEPGTPAEPGKPAEPGKPAEPGKPAEPGTP 1386          

HSP 3 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 3
Query:  552 EPSKPAQPEKPEQPTKPVYEQPKPSKPAETQPGYEQPKPSKPVYEQPSKPVYEQPSQPATPGKPTYPGKPSQPAPHHNGTVPVYPTPPAES 824
            EP KPA+P KP +P KP  E  KP++P +        +P KP   +P KP   +P +PA PG P  PGKP++P        P  P  P +S
Sbjct: 1328 EPGKPAEPGKPAEPGKPA-EPGKPAEPGKPAEPGTPAEPGKPA--EPGKPA--EPGKPAEPGTPAEPGKPAEPGTPAEPGKPAEPGTPTQS 1413          
BLAST of FC878727 vs. ExPASy Swiss-Prot
Match: SSP5_STRGN (Agglutinin receptor OS=Streptococcus gordonii GN=ssp5 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.061e-11
Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = 3
Query:  519 YAVSTTICPVGEPSKPAQPEKPEQPTKPVYEQPKPSKPAETQPGYE-----------QPKPSKPVYEQPSKPVYEQPSQPATPGKPTYPGKPSQPAPHHNGTVPVYPTPPAESSNKPVCPATPVP 860
            +A ++ I  +G P+KP  P  P   T+P+YE  KP +PA   P YE           QP+PSKP  E+P+    E+P +PA P  P+Y  +P+ P    +   P  P  P   + KP+ PA   P
Sbjct:  745 FAFNSNINAIGVPTKPVAPTAP---TQPMYETEKPLEPAPVAPSYENEPTPPVKTPDQPEPSKP--EEPTYET-EKPLEPA-PVAPSYENEPTPPVKTPDQPEPSKPEEPNYETEKPLEPAPVAP 862          
BLAST of FC878727 vs. ExPASy Swiss-Prot
Match: FTSK_SALTY (DNA translocase ftsK OS=Salmonella typhimurium GN=ftsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 55/168 (32.74%), Postives = 77/168 (45.83%), Query Frame = 3
Query:  444 IKTITSCGPEVTNCPARSTVVTTETYAVSTTICPVGEPS--KPAQPEKPE----QPTKPVYEQPK---PSKPAETQPGYEQPKPS---KPVYEQPSKPV-----YEQPSQPATPGKPTYPGKPSQP-APHHNGTVPVYPTPPAESSNKPVC-----------PATPVP 860
            +K +   GP     P  +  V  E+  V   + P  +P   +P QP  P+    QP +PV  QP+   P +P   QP Y+QP+     +P Y+QP +PV     Y+QP QP  P +P Y  +P QP AP      P  PT P +S   P+            P TP+P
Sbjct:  701 MKVLVDEGPHE---PLFTPGVMPESTPVQQPVAPQPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP-QPQYQ-QPQQPVAPQPQYQQPQQPTAPQDSLIHPLLMRNGDSRPLQRPTTPLP 863          
The following BLAST results are available for this feature:
BLAST of FC878727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SPAP_STRMU2.544e-1337.30Cell surface antigen I/II OS=Streptococcus mutans ... [more]
PAC_STRMU2.544e-1337.30Major cell-surface adhesin PAc OS=Streptococcus mu... [more]
PLS_STAES5.667e-1341.28Accumulation-associated protein OS=Staphylococcus ... [more]
SSP5_STRGN4.061e-1135.20Agglutinin receptor OS=Streptococcus gordonii GN=s... [more]
FTSK_SALTY9.047e-1132.74DNA translocase ftsK OS=Salmonella typhimurium GN=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA26BA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA26BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878727 ID=FC878727; Name=FC878727; organism=Citrus clementina; type=EST; length=861bp
CCTACACTTCAAAGCTGCCTGCTTCTTGACTCCTTTTGACTTCGGTCGTC
CATTCTTTCACCACTTTCAACAGCTATCAACCTTTTGAGCTTTAAGCTTA
TCCACTCTTTACAACCAAAACACCCTTCTTCTCAACCATCAACACTTTCA
AGATGCGTTACACTGTTGCCGCCGCTCTCCTGGCCTCTTCGGCCATGGCC
ACCAAGGACGTTGTCTACCAGACTGAGCTCGTCACCATCACCTCTTGCGG
TCCTGAGGTCACTAACTGCCCTGCTCGATCCACCGTCGTCAGCACCACCT
CTTACCCCGTTGTCGAGACCTCCGAGGCTCCCATCCCTACCTACGAGGCT
CCCGTCCCCACCTACGAGGCCCCCGAGCCTACCTCTGAGGCTCCCGAGAC
CACTGAGGTTCCTCTGACCACCTCCACCATCTACAGCACCAACATCAAGA
CCATCACCTCTTGCGGTCCCGAGGTCACCAACTGCCCTGCTCGCTCCACC
GTTGTCACCACCGAGACCTATGCTGTTTCCACCACCATCTGCCCCGTTGG
TGAGCCCAGCAAGCCCGCTCAGCCTGAGAAGCCTGAGCAGCCTACCAAGC
CCGTCTACGAGCAGCCCAAGCCCAGCAAGCCTGCTGAGACTCAGCCCGGT
TATGAGCAGCCTAAGCCCAGCAAGCCCGTGTATGAGCAGCCCAGCAAGCC
TGTCTACGAGCAGCCTTCTCAGCCCGCTACTCCCGGAAAGCCTACCTACC
CCGGAAAGCCTTCCCAGCCCGCTCCCCACCACAACGGCACTGTTCCTGTC
TACCCCACCCCTCCTGCTGAGTCCAGCAACAAGCCCGTTTGTCCCGCTAC
TCCCGTCCCTG
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